petsc_matrix.h

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// The libMesh Finite Element Library.
// Copyright (C) 2002-2014 Benjamin S. Kirk, John W. Peterson, Roy H. Stogner

// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.

// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.

// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA



#ifndef LIBMESH_PETSC_MATRIX_H
#define LIBMESH_PETSC_MATRIX_H

#include "libmesh/libmesh_common.h"

#ifdef LIBMESH_HAVE_PETSC

// Local includes
#include "libmesh/sparse_matrix.h"
#include "libmesh/petsc_macro.h"
#include "libmesh/parallel.h"

// C++ includes
#include <algorithm>

// Macro to identify and debug functions which should be called in
// parallel on parallel matrices but which may be called in serial on
// serial matrices.  This macro will only be valid inside non-static
// PetscMatrix methods
#undef semiparallel_only
#ifndef NDEBUG
#include <cstring>

#define semiparallel_only() do { if (this->initialized()) { const char *mytype; \
      MatGetType(_mat,&mytype);                                         \
      if (!strcmp(mytype, MATSEQAIJ))                                   \
        parallel_object_only(); } } while (0)
#else
#define semiparallel_only()
#endif


EXTERN_C_FOR_PETSC_BEGIN
# include <petscmat.h>
EXTERN_C_FOR_PETSC_END



namespace libMesh
{

// Forward Declarations
template <typename T> class DenseMatrix;


template <typename T>
class PetscMatrix : public SparseMatrix<T>
{
public:
  explicit
  PetscMatrix (const Parallel::Communicator &comm_in
               LIBMESH_CAN_DEFAULT_TO_COMMWORLD);

  explicit
  PetscMatrix (Mat m,
               const Parallel::Communicator &comm_in
               LIBMESH_CAN_DEFAULT_TO_COMMWORLD);

  ~PetscMatrix ();

  void init (const numeric_index_type m,
             const numeric_index_type n,
             const numeric_index_type m_l,
             const numeric_index_type n_l,
             const numeric_index_type nnz=30,
             const numeric_index_type noz=10,
             const numeric_index_type blocksize=1);

  void init (const numeric_index_type m,
             const numeric_index_type n,
             const numeric_index_type m_l,
             const numeric_index_type n_l,
             const std::vector<numeric_index_type>& n_nz,
             const std::vector<numeric_index_type>& n_oz,
             const numeric_index_type blocksize=1);

  void init ();

  void clear ();

  void zero ();

  void zero_rows (std::vector<numeric_index_type> & rows, T diag_value = 0.0);

  void close () const;

  numeric_index_type m () const;

  numeric_index_type n () const;

  numeric_index_type row_start () const;

  numeric_index_type row_stop () const;

  void set (const numeric_index_type i,
            const numeric_index_type j,
            const T value);

  void add (const numeric_index_type i,
            const numeric_index_type j,
            const T value);

  void add_matrix (const DenseMatrix<T> &dm,
                   const std::vector<numeric_index_type> &rows,
                   const std::vector<numeric_index_type> &cols);

  void add_matrix (const DenseMatrix<T> &dm,
                   const std::vector<numeric_index_type> &dof_indices);

  virtual void add_block_matrix (const DenseMatrix<T> &dm,
                                 const std::vector<numeric_index_type> &brows,
                                 const std::vector<numeric_index_type> &bcols);

  virtual void add_block_matrix (const DenseMatrix<T> &dm,
                                 const std::vector<numeric_index_type> &dof_indices)
  { this->add_block_matrix (dm, dof_indices, dof_indices); }

  void add (const T a, SparseMatrix<T> &X);

  T operator () (const numeric_index_type i,
                 const numeric_index_type j) const;

  Real l1_norm () const;

  Real linfty_norm () const;

  bool closed() const;

  void print_personal(std::ostream& os=libMesh::out) const;

  void print_matlab(const std::string& name = "") const;

  virtual void get_diagonal (NumericVector<T>& dest) const;

  virtual void get_transpose (SparseMatrix<T>& dest) const;

  void swap (PetscMatrix<T> &);

  Mat mat () { libmesh_assert (_mat); return _mat; }

protected:

  virtual void _get_submatrix(SparseMatrix<T>& submatrix,
                              const std::vector<numeric_index_type>& rows,
                              const std::vector<numeric_index_type>& cols,
                              const bool reuse_submatrix) const;

private:

  Mat _mat;

  bool _destroy_mat_on_exit;
};

} // namespace libMesh

#endif // #ifdef LIBMESH_HAVE_PETSC
#endif // LIBMESH_PETSC_MATRIX_H