Package Pyblio :: Package External :: Module PubMed :: Class PubMed

Class PubMed

object --+
         |
        PubMed

A connection to the PubMed database

Instance Methods

[hide private]

__init__(self, db)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

_query(self, service, args, **kargs)

source code

count(self, query, db='PubMed') source code

search(self, query, maxhits=500, db='PubMed') source code

cancel(self)
Cancel a running query.

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

schema = 'org.pybliographer/pubmed/0.1'

baseURL = 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'

BATCH_SIZE = 500

toolName = 'pybliographer'

adminEmail = 'webmaster@pybliographer.org'

log = logging.getLogger('pyblio.external.pubmed')

SRV_SEARCH = '/esearch.fcgi'

SRV_FETCH = '/efetch.fcgi'

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, db)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

cancel(self)

source code

Cancel a running query. The database is not reverted to its original state.

Class PubMed

__init__(self, db) (Constructor)

cancel(self)

init(self, db)
(Constructor)