Mouse ENCODE Downloads
This page contains links to directories containing raw and processed data for mouse ENCODE data produced as part of the ENCODE production phase (September 2007-present). Formats are described on the UCSC Browser File Format FAQ. For bulk download, retrieval by FTP is recommended. All files here are covered by the ENCODE data release policy. Preview of unreleased data for download is available from the Test download server and by FTP. Preview data is made available with the warning that it has not yet been reviewed by UCSC for correctness and is subject to change at any time. Mouse Genome Build NCBI37/mm9
Bidirectional Promoters
NHGRI BiP | NHGRI Elnitski Bidirectional Promoters
Chromatin Accessibility
UW DNaseI HS | DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Histone Modification
Caltech Histone | Histone Modifications by ChIP-seq from ENCODE/Caltech
LICR Histone | Histone Modifications by ChIP-seq from ENCODE/LICR
Stan/Yale Histone | Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale
Transcription Factor Binding Sites
Caltech TFBS | Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
LICR TFBS | Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR
Stan/Yale TFBS | Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
RNA-seq
LICR RNA-seq | RNA-seq from ENCODE/LICR