## Description

This track shows alignments of International Gene Trap Consortium sequence tags to the $organism genome. Items are labeled by cell line and colored by source:

BG: | BayGenomics (USA)
CMHD: | Centre for Modeling Human Disease (Toronto, Canada)
EGTC: | Exchangeable Gene Trap Clones (Kumamoto University, Japan)
ESDB: | Embryonic Stem Cell Database (University of Manitoba, Canada)
FHCRC: | Soriano Lab Gene Trap Database (Fred Hutchinson Cancer Research Center, Seattle, USA)
GGTC: | German Gene Trap Consortium (Germany)
SIGTR: | Sanger Institute Gene Trap Resource (Cambridge, UK)
TIGEM: | TIGEM-IRBM Gene Trap (Naples, Italy)
TIGM: | Texas Institute for Genomic Medicine (Houston, Texas)

## Methods

The IGTC pipeline uses BLAT to align sequence tags from dbGSS to the $organism genome and BLAST to match sequence tags to genes. The pipeline filters and reconciles the two sets of alignments to associate cell lines with trapped genes.

## Credits

Thanks to the International Gene Trap Consortium for providing this track.