############ wgEncodeBroadHistone composite hg19 submissions ###############

2010-06-21 June Freeze
======================
No GM12878 or NH-A cells lines.  No Peaks or replacement fastqs

update projects set name = concat("Broad 2010-06-21 ",metadata) where id >= 1680 and user_id = 34 and status = "loaded" and name like "BI%"; 

select id,name,status,user_id,metadata from projects where user_id = 34 and status = "loaded" order by id;
+------+------------------------------------------+--------+---------+-------------------------+
| id   | name                                     | status | user_id | metadata                |
+------+------------------------------------------+--------+---------+-------------------------+
| 1680 | Broad 2010-06-21 CTCF, NHEK, std         | loaded |      34 | CTCF, NHEK, std         | 
| 1683 | Broad 2010-06-21 H3K36me3, HSMMtube, std | loaded |      34 | H3K36me3, HSMMtube, std | 
| 1684 | Broad 2010-06-21 H3K36me3, HepG2, std    | loaded |      34 | H3K36me3, HepG2, std    | 
| 1685 | Broad 2010-06-21 H3K27me3, NHLF, std     | loaded |      34 | H3K27me3, NHLF, std     | 
| 1686 | Broad 2010-06-21 Control, HSMMtube, std  | loaded |      34 | Control, HSMMtube, std  | 
| 1687 | Broad 2010-06-21 H3K4me2, HSMM, std      | loaded |      34 | H3K4me2, HSMM, std      | 
| 1688 | Broad 2010-06-21 H3K9me1, NHEK, std      | loaded |      34 | H3K9me1, NHEK, std      | 
| 1689 | Broad 2010-06-21 H3K27me3, HUVEC, std    | loaded |      34 | H3K27me3, HUVEC, std    | 
| 1690 | Broad 2010-06-21 H3K36me3, HMEC, std     | loaded |      34 | H3K36me3, HMEC, std     | 
| 1691 | Broad 2010-06-21 H3K27me3, HSMM, std     | loaded |      34 | H3K27me3, HSMM, std     | 
| 1692 | Broad 2010-06-21 H3K9ac, HUVEC, std      | loaded |      34 | H3K9ac, HUVEC, std      | 
| 1693 | Broad 2010-06-21 CTCF, HSMM, std         | loaded |      34 | CTCF, HSMM, std         | 
| 1694 | Broad 2010-06-21 H3K27ac, HeLa-S3, std   | loaded |      34 | H3K27ac, HeLa-S3, std   | 
| 1695 | Broad 2010-06-21 H3K4me3, HUVEC, std     | loaded |      34 | H3K4me3, HUVEC, std     | 
| 1696 | Broad 2010-06-21 H3K4me3, K562, std      | loaded |      34 | H3K4me3, K562, std      | 
| 1697 | Broad 2010-06-21 H3K4me2, NHEK, std      | loaded |      34 | H3K4me2, NHEK, std      | 
| 1698 | Broad 2010-06-21 Control, HUVEC, std     | loaded |      34 | Control, HUVEC, std     | 
| 1699 | Broad 2010-06-21 H4K20me1, NHLF, std     | loaded |      34 | H4K20me1, NHLF, std     | 
| 1700 | Broad 2010-06-21 H4K20me1, K562, std     | loaded |      34 | H4K20me1, K562, std     | 
| 1701 | Broad 2010-06-21 H3K27ac, K562, std      | loaded |      34 | H3K27ac, K562, std      | 
| 1702 | Broad 2010-06-21 H3K9ac, HMEC, std       | loaded |      34 | H3K9ac, HMEC, std       | 
| 1703 | Broad 2010-06-21 H3K4me1, NHLF, std      | loaded |      34 | H3K4me1, NHLF, std      | 
| 1704 | Broad 2010-06-21 H2A.Z, HSMMtube, std    | loaded |      34 | H2A.Z, HSMMtube, std    | 
| 1705 | Broad 2010-06-21 H3K9ac, H1-hESC, std    | loaded |      34 | H3K9ac, H1-hESC, std    | 
| 1706 | Broad 2010-06-21 H3K4me3, HepG2, std     | loaded |      34 | H3K4me3, HepG2, std     | 
| 1707 | Broad 2010-06-21 CTCF, NHLF, std         | loaded |      34 | CTCF, NHLF, std         | 
| 1708 | Broad 2010-06-21 H3K9ac, NHLF, std       | loaded |      34 | H3K9ac, NHLF, std       | 
| 1709 | Broad 2010-06-21 CTCF, HeLa-S3, std      | loaded |      34 | CTCF, HeLa-S3, std      | 
| 1710 | Broad 2010-06-21 Control, NHLF, std      | loaded |      34 | Control, NHLF, std      | 
| 1711 | Broad 2010-06-21 H4K20me1, HeLa-S3, std  | loaded |      34 | H4K20me1, HeLa-S3, std  | 
| 1712 | Broad 2010-06-21 H3K27me3, K562, std     | loaded |      34 | H3K27me3, K562, std     | 
| 1713 | Broad 2010-06-21 H3K4me1, HSMM, std      | loaded |      34 | H3K4me1, HSMM, std      | 
| 1714 | Broad 2010-06-21 H3K4me2, K562, std      | loaded |      34 | H3K4me2, K562, std      | 
| 1715 | Broad 2010-06-21 H4K20me1, HSMM, std     | loaded |      34 | H4K20me1, HSMM, std     | 
| 1716 | Broad 2010-06-21 H3K4me3, HSMMtube, std  | loaded |      34 | H3K4me3, HSMMtube, std  | 
| 1717 | Broad 2010-06-21 H3K9me3, HSMM, std      | loaded |      34 | H3K9me3, HSMM, std      | 
| 1718 | Broad 2010-06-21 H3K27ac, HSMM, std      | loaded |      34 | H3K27ac, HSMM, std      | 
| 1719 | Broad 2010-06-21 Control, HepG2, std     | loaded |      34 | Control, HepG2, std     | 
| 1720 | Broad 2010-06-21 H3K9me1, K562, std      | loaded |      34 | H3K9me1, K562, std      | 
| 1721 | Broad 2010-06-21 H3K27me3, H1-hESC, std  | loaded |      34 | H3K27me3, H1-hESC, std  | 
| 1722 | Broad 2010-06-21 H3K36me3, HUVEC, std    | loaded |      34 | H3K36me3, HUVEC, std    | 
| 1723 | Broad 2010-06-21 H3K4me3, NHEK, std      | loaded |      34 | H3K4me3, NHEK, std      | 
| 1724 | Broad 2010-06-21 H3K79me2, HSMMtube, std | loaded |      34 | H3K79me2, HSMMtube, std | 
| 1725 | Broad 2010-06-21 H3K4me1, NHEK, std      | loaded |      34 | H3K4me1, NHEK, std      | 
| 1726 | Broad 2010-06-21 H3K36me3, K562, std     | loaded |      34 | H3K36me3, K562, std     | 
| 1727 | Broad 2010-06-21 Pol2(b), HUVEC, std     | loaded |      34 | Pol2(b), HUVEC, std     | 
| 1728 | Broad 2010-06-21 H4K20me1, HSMMtube, std | loaded |      34 | H4K20me1, HSMMtube, std | 
| 1729 | Broad 2010-06-21 H3K9me1, HUVEC, std     | loaded |      34 | H3K9me1, HUVEC, std     | 
| 1730 | Broad 2010-06-21 H3K79me2, HSMM, std     | loaded |      34 | H3K79me2, HSMM, std     | 
| 1731 | Broad 2010-06-21 H3K27ac, HUVEC, std     | loaded |      34 | H3K27ac, HUVEC, std     | 
| 1732 | Broad 2010-06-21 H3K4me2, HUVEC, std     | loaded |      34 | H3K4me2, HUVEC, std     | 
| 1733 | Broad 2010-06-21 H3K27me3, NHEK, std     | loaded |      34 | H3K27me3, NHEK, std     | 
| 1734 | Broad 2010-06-21 H3K36me3, H1-hESC, std  | loaded |      34 | H3K36me3, H1-hESC, std  | 
| 1735 | Broad 2010-06-21 H3K4me1, K562, std      | loaded |      34 | H3K4me1, K562, std      | 
| 1737 | Broad 2010-06-21 Pol2(b), NHEK, std      | loaded |      34 | Pol2(b), NHEK, std      | 
| 1738 | Broad 2010-06-21 H3K27ac, NHLF, std      | loaded |      34 | H3K27ac, NHLF, std      | 
| 1739 | Broad 2010-06-21 H3K4me2, NHLF, std      | loaded |      34 | H3K4me2, NHLF, std      | 
| 1741 | Broad 2010-06-21 H3K27ac, HepG2, std     | loaded |      34 | H3K27ac, HepG2, std     | 
| 1742 | Broad 2010-06-21 CTCF, HMEC, std         | loaded |      34 | CTCF, HMEC, std         | 
| 1743 | Broad 2010-06-21 Pol2(b), HeLa-S3, std   | loaded |      34 | Pol2(b), HeLa-S3, std   | 
| 1744 | Broad 2010-06-21 H3K79me2, HeLa-S3, std  | loaded |      34 | H3K79me2, HeLa-S3, std  | 
| 1745 | Broad 2010-06-21 H3K4me3, H1-hESC, std   | loaded |      34 | H3K4me3, H1-hESC, std   | 
| 1746 | Broad 2010-06-21 H3K9ac, HSMMtube, std   | loaded |      34 | H3K9ac, HSMMtube, std   | 
| 1747 | Broad 2010-06-21 H3K79me2, HepG2, std    | loaded |      34 | H3K79me2, HepG2, std    | 
| 1748 | Broad 2010-06-21 H3K9ac, K562, std       | loaded |      34 | H3K9ac, K562, std       | 
| 1749 | Broad 2010-06-21 H3K27ac, HSMMtube, std  | loaded |      34 | H3K27ac, HSMMtube, std  | 
| 1750 | Broad 2010-06-21 H3K36me3, NHLF, std     | loaded |      34 | H3K36me3, NHLF, std     | 
| 1751 | Broad 2010-06-21 H3K4me3, HeLa-S3, std   | loaded |      34 | H3K4me3, HeLa-S3, std   | 
| 1752 | Broad 2010-06-21 Control, K562, std      | loaded |      34 | Control, K562, std      | 
| 1753 | Broad 2010-06-21 H3K27ac, H1-hESC, std   | loaded |      34 | H3K27ac, H1-hESC, std   | 
| 1754 | Broad 2010-06-21 H3K36me3, NHEK, std     | loaded |      34 | H3K36me3, NHEK, std     | 
| 1755 | Broad 2010-06-21 H3K4me2, HeLa-S3, std   | loaded |      34 | H3K4me2, HeLa-S3, std   | 
| 1756 | Broad 2010-06-21 H3K4me3, HSMM, std      | loaded |      34 | H3K4me3, HSMM, std      | 
| 1757 | Broad 2010-06-21 H3K4me2, HMEC, std      | loaded |      34 | H3K4me2, HMEC, std      | 
| 1758 | Broad 2010-06-21 H4K20me1, HepG2, std    | loaded |      34 | H4K20me1, HepG2, std    | 
| 1759 | Broad 2010-06-21 H3K4me1, HMEC, std      | loaded |      34 | H3K4me1, HMEC, std      | 
| 1760 | Broad 2010-06-21 Control, H1-hESC, std   | loaded |      34 | Control, H1-hESC, std   | 
| 1761 | Broad 2010-06-21 H3K4me2, HepG2, std     | loaded |      34 | H3K4me2, HepG2, std     | 
| 1762 | Broad 2010-06-21 H3K36me3, HSMM, std     | loaded |      34 | H3K36me3, HSMM, std     | 
| 1763 | Broad 2010-06-21 H4K20me1, HUVEC, std    | loaded |      34 | H4K20me1, HUVEC, std    | 
| 1764 | Broad 2010-06-21 H3K4me1, HSMMtube, std  | loaded |      34 | H3K4me1, HSMMtube, std  | 
| 1765 | Broad 2010-06-21 H3K9ac, HepG2, std      | loaded |      34 | H3K9ac, HepG2, std      | 
| 1766 | Broad 2010-06-21 H3K4me2, HSMMtube, std  | loaded |      34 | H3K4me2, HSMMtube, std  | 
| 1767 | Broad 2010-06-21 CTCF, HSMMtube, std     | loaded |      34 | CTCF, HSMMtube, std     | 
| 1769 | Broad 2010-06-21 CTCF, K562, std         | loaded |      34 | CTCF, K562, std         | 
| 1770 | Broad 2010-06-21 H3K27me3, HMEC, std     | loaded |      34 | H3K27me3, HMEC, std     | 
| 1771 | Broad 2010-06-21 Control, HeLa-S3, std   | loaded |      34 | Control, HeLa-S3, std   | 
| 1772 | Broad 2010-06-21 H3K27ac, NHEK, std      | loaded |      34 | H3K27ac, NHEK, std      | 
| 1773 | Broad 2010-06-21 Control, HSMM, std      | loaded |      34 | Control, HSMM, std      | 
| 1774 | Broad 2010-06-21 H4K20me1, H1-hESC, std  | loaded |      34 | H4K20me1, H1-hESC, std  | 
| 1775 | Broad 2010-06-21 Control, NHEK, std      | loaded |      34 | Control, NHEK, std      | 
| 1776 | Broad 2010-06-21 H3K27ac, HMEC, std      | loaded |      34 | H3K27ac, HMEC, std      | 
| 1777 | Broad 2010-06-21 H3K4me2, H1-hESC, std   | loaded |      34 | H3K4me2, H1-hESC, std   | 
| 1778 | Broad 2010-06-21 H3K4me1, HUVEC, std     | loaded |      34 | H3K4me1, HUVEC, std     | 
| 1779 | Broad 2010-06-21 H3K4me3, NHLF, std      | loaded |      34 | H3K4me3, NHLF, std      | 
| 1780 | Broad 2010-06-21 H3K36me3, HeLa-S3, std  | loaded |      34 | H3K36me3, HeLa-S3, std  | 
| 1781 | Broad 2010-06-21 CTCF, H1-hESC, std      | loaded |      34 | CTCF, H1-hESC, std      | 
| 1782 | Broad 2010-06-21 H3K9ac, HSMM, std       | loaded |      34 | H3K9ac, HSMM, std       | 
| 1783 | Broad 2010-06-21 H3K4me1, H1-hESC, std   | loaded |      34 | H3K4me1, H1-hESC, std   | 
| 1784 | Broad 2010-06-21 H4K20me1, NHEK, std     | loaded |      34 | H4K20me1, NHEK, std     | 
| 1785 | Broad 2010-06-21 H4K20me1, HMEC, std     | loaded |      34 | H4K20me1, HMEC, std     | 
| 1786 | Broad 2010-06-21 Control, HMEC, std      | loaded |      34 | Control, HMEC, std      | 
| 1787 | Broad 2010-06-21 CTCF, HepG2, std        | loaded |      34 | CTCF, HepG2, std        | 
| 1788 | Broad 2010-06-21 H3K27me3, HepG2, std    | loaded |      34 | H3K27me3, HepG2, std    | 
| 1789 | Broad 2010-06-21 Pol2(b), K562, std      | loaded |      34 | Pol2(b), K562, std      | 
| 1790 | Broad 2010-06-21 CTCF, HUVEC, std        | loaded |      34 | CTCF, HUVEC, std        | 
| 1791 | Broad 2010-06-21 H3K9ac, HeLa-S3, std    | loaded |      34 | H3K9ac, HeLa-S3, std    | 
| 1792 | Broad 2010-06-21 H2A.Z, HepG2, std       | loaded |      34 | H2A.Z, HepG2, std       | 
| 1793 | Broad 2010-06-21 H3K4me3, HMEC, std      | loaded |      34 | H3K4me3, HMEC, std      | 
| 1794 | Broad 2010-06-21 H3K9ac, NHEK, std       | loaded |      34 | H3K9ac, NHEK, std       | 
+------+------------------------------------------+--------+---------+-------------------------+
110 rows in set (0.00 sec)

# load up the trackDb...
rm /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1680/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1683/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1684/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1685/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1686/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1687/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1688/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1689/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1690/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1691/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1692/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1693/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1694/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1695/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1696/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1697/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1698/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1699/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1700/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1701/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1702/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1703/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1704/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1705/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1706/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1707/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1708/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1709/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1710/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1711/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1712/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1713/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1714/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1715/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1716/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1717/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1718/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1719/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1720/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1721/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1722/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1723/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1724/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1725/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1726/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1727/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1728/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1729/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1730/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1731/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1732/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1733/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1734/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1735/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1737/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1738/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1739/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1741/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1742/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1743/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1744/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1745/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1746/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1747/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1748/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1749/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1750/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1751/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1752/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1753/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1754/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1755/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1756/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1757/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1758/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1759/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1760/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1761/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1762/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1763/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1764/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1765/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1766/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1767/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1769/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1770/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1771/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1772/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1773/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1774/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1775/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1776/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1777/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1778/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1779/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1780/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1781/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1782/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1783/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1784/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1785/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1786/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1787/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1788/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1789/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1790/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1791/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1792/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1793/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1794/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra

cd /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/
raToLines tmp.ra tmp.txt
grep compositeTrack tmp.txt > tmpC.txt
grep view=Peaks tmp.txt > tmpP.txt
grep view=Signal tmp.txt > tmpS.txt
wl tmp?.txt
   110 tmpC.txt
     0 tmpP.txt
   110 tmpS.txt
   220 total
wl tmp.txt
220 tmp.txt
# so only signals to worry about

grep -v rep1 tmpS.txt | grep -v rep2 | wl
110
# And no replicates in thje signals
linesToRa tmpS.txt tmpS.ra
e tmpS.ra
cd ..
cp ../hg18/wgEncodeBroadChipSeq.ra wgEncodeBroadHistone.ra
cp ../hg18/wgEncodeBroadChipSeq.html wgEncodeBroadHistone.html
e wgEncodeBroadHistone.html wgEncodeUwHistone.html # mark it as preliminary
e trackDb.wgEncode.ra # include wgEncodeBroadHistone.ra
e wgEncodeBroadHistone.ra
make DBS=hg19 # till working
git add wgEncodeBroadHistone.ra wgEncodeBroadHistone.html trackDb.wgEncode.ra
git commit; pull; push

# now metadata
mdbUpdate hg19 1680/out/mdb.txt
mdbUpdate hg19 1683/out/mdb.txt
mdbUpdate hg19 1684/out/mdb.txt
mdbUpdate hg19 1685/out/mdb.txt
mdbUpdate hg19 1686/out/mdb.txt
mdbUpdate hg19 1687/out/mdb.txt
mdbUpdate hg19 1688/out/mdb.txt
mdbUpdate hg19 1689/out/mdb.txt
mdbUpdate hg19 1690/out/mdb.txt
mdbUpdate hg19 1691/out/mdb.txt
mdbUpdate hg19 1692/out/mdb.txt
mdbUpdate hg19 1693/out/mdb.txt
mdbUpdate hg19 1694/out/mdb.txt
mdbUpdate hg19 1695/out/mdb.txt
mdbUpdate hg19 1696/out/mdb.txt
mdbUpdate hg19 1697/out/mdb.txt
mdbUpdate hg19 1698/out/mdb.txt
mdbUpdate hg19 1699/out/mdb.txt
mdbUpdate hg19 1700/out/mdb.txt
mdbUpdate hg19 1701/out/mdb.txt
mdbUpdate hg19 1702/out/mdb.txt
mdbUpdate hg19 1703/out/mdb.txt
mdbUpdate hg19 1704/out/mdb.txt
mdbUpdate hg19 1705/out/mdb.txt
mdbUpdate hg19 1706/out/mdb.txt
mdbUpdate hg19 1707/out/mdb.txt
mdbUpdate hg19 1708/out/mdb.txt
mdbUpdate hg19 1709/out/mdb.txt
mdbUpdate hg19 1710/out/mdb.txt
mdbUpdate hg19 1711/out/mdb.txt
mdbUpdate hg19 1712/out/mdb.txt
mdbUpdate hg19 1713/out/mdb.txt
mdbUpdate hg19 1714/out/mdb.txt
mdbUpdate hg19 1715/out/mdb.txt
mdbUpdate hg19 1716/out/mdb.txt
mdbUpdate hg19 1717/out/mdb.txt
mdbUpdate hg19 1718/out/mdb.txt
mdbUpdate hg19 1719/out/mdb.txt
mdbUpdate hg19 1720/out/mdb.txt
mdbUpdate hg19 1721/out/mdb.txt
mdbUpdate hg19 1722/out/mdb.txt
mdbUpdate hg19 1723/out/mdb.txt
mdbUpdate hg19 1724/out/mdb.txt
mdbUpdate hg19 1725/out/mdb.txt
mdbUpdate hg19 1726/out/mdb.txt
mdbUpdate hg19 1727/out/mdb.txt
mdbUpdate hg19 1728/out/mdb.txt
mdbUpdate hg19 1729/out/mdb.txt
mdbUpdate hg19 1730/out/mdb.txt
mdbUpdate hg19 1731/out/mdb.txt
mdbUpdate hg19 1732/out/mdb.txt
mdbUpdate hg19 1733/out/mdb.txt
mdbUpdate hg19 1734/out/mdb.txt
mdbUpdate hg19 1735/out/mdb.txt
mdbUpdate hg19 1737/out/mdb.txt
mdbUpdate hg19 1738/out/mdb.txt
mdbUpdate hg19 1739/out/mdb.txt
mdbUpdate hg19 1741/out/mdb.txt
mdbUpdate hg19 1742/out/mdb.txt
mdbUpdate hg19 1743/out/mdb.txt
mdbUpdate hg19 1744/out/mdb.txt
mdbUpdate hg19 1745/out/mdb.txt
mdbUpdate hg19 1746/out/mdb.txt
mdbUpdate hg19 1747/out/mdb.txt
mdbUpdate hg19 1748/out/mdb.txt
mdbUpdate hg19 1749/out/mdb.txt
mdbUpdate hg19 1750/out/mdb.txt
mdbUpdate hg19 1751/out/mdb.txt
mdbUpdate hg19 1752/out/mdb.txt
mdbUpdate hg19 1753/out/mdb.txt
mdbUpdate hg19 1754/out/mdb.txt
mdbUpdate hg19 1755/out/mdb.txt
mdbUpdate hg19 1756/out/mdb.txt
mdbUpdate hg19 1757/out/mdb.txt
mdbUpdate hg19 1758/out/mdb.txt
mdbUpdate hg19 1759/out/mdb.txt
mdbUpdate hg19 1760/out/mdb.txt
mdbUpdate hg19 1761/out/mdb.txt
mdbUpdate hg19 1762/out/mdb.txt
mdbUpdate hg19 1763/out/mdb.txt
mdbUpdate hg19 1764/out/mdb.txt
mdbUpdate hg19 1765/out/mdb.txt
mdbUpdate hg19 1766/out/mdb.txt
mdbUpdate hg19 1767/out/mdb.txt
mdbUpdate hg19 1769/out/mdb.txt
mdbUpdate hg19 1770/out/mdb.txt
mdbUpdate hg19 1771/out/mdb.txt
mdbUpdate hg19 1772/out/mdb.txt
mdbUpdate hg19 1773/out/mdb.txt
mdbUpdate hg19 1774/out/mdb.txt
mdbUpdate hg19 1775/out/mdb.txt
mdbUpdate hg19 1776/out/mdb.txt
mdbUpdate hg19 1777/out/mdb.txt
mdbUpdate hg19 1778/out/mdb.txt
mdbUpdate hg19 1779/out/mdb.txt
mdbUpdate hg19 1780/out/mdb.txt
mdbUpdate hg19 1781/out/mdb.txt
mdbUpdate hg19 1782/out/mdb.txt
mdbUpdate hg19 1783/out/mdb.txt
mdbUpdate hg19 1784/out/mdb.txt
mdbUpdate hg19 1785/out/mdb.txt
mdbUpdate hg19 1786/out/mdb.txt
mdbUpdate hg19 1787/out/mdb.txt
mdbUpdate hg19 1788/out/mdb.txt
mdbUpdate hg19 1789/out/mdb.txt
mdbUpdate hg19 1790/out/mdb.txt
mdbUpdate hg19 1791/out/mdb.txt
mdbUpdate hg19 1792/out/mdb.txt
mdbUpdate hg19 1793/out/mdb.txt
mdbUpdate hg19 1794/out/mdb.txt
Using table named 'hg19.metaDb_tdreszer'.
Read 4 metadata objects from hg19
Affected 79 row(s) in hg19.metaDb_tdreszer
...

# Now update dates
cd /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing
mdbPrint hg18 -table=metaDb -vars="composite=wgEncodeBroadChipSeq" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="grant,dataType,cell,antibody,view,replicate" -updVars="dateSubmitted,dateUnrestricted" > broadHistDates.txt
objects:549  vars:10065
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="subId" -updVars="dateSubmitted" > broadHistResub.txt
objects:348  vars:6850
e broadHistDates.txt # Add origAssembly=hg18
chmod 755 broadHist*.txt
./broadHistDates.txt
Affected 2 row(s) in hg19.metaDb_tdreszer
Affected 0 row(s) in hg19.metaDb_tdreszer
...

e broadHistResub.txt # Add select origAssembly=hg18, change dateSubmitted to dateResubmitted
./broadHistResub.txt
Affected 4 row(s) in hg19.metaDb_tdreszer
Affected 0 row(s) in hg19.metaDb_tdreszer # not remapped!
...

cd ..
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:348  vars:7120
mdbUpdate hg19 -table=metaDb wgEncodeBroadHistone.ra
Read 348 metadata objects from hg19
Affected 7120 row(s) in hg19.metaDb

e makefile # add wgEncodeBroadHistone.ra
git add makefile wgEncodeBroadHistone.ra 
git commit -m "Metadata for Broad Histone June 2010 freeze"
git pull; git push
make alpha DBS=hg19

# Now downloads:
cd /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone
e preamble.html ../wgEncodeUwHistone/preamble.html
encodeDownloadsPage.pl -db=hg19 index.html

/cluster/data/encode/pipeline/bin/encodeStatus.pl 1680 displayed
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/cluster/data/encode/pipeline/bin/encodeStatus.pl 1794 displayed

select id,name,status,user_id,metadata from projects where user_id = 34 and status = "loaded" order by id;
Empty set (0.00 sec)

2010-07-14 Reloading bams and adding GM12878 and NH-A
=====================================================

select id,name,status,user_id from projects where name like "Broad%" and status like "loa%";
+------+-----------------------------------+----------------+---------+
| id   | name                              | status         | user_id |
+------+-----------------------------------+----------------+---------+
| 1877 | Broad_2010-07-12_NHLF             | loaded         |      34 | 
| 1878 | Broad_2010-07-12_GM12878_CTCF     | loaded         |      34 | 
| 1879 | Broad_2010-07-12_GM12878_Control  | loaded         |      34 | 
| 1880 | Broad_2010-07-12_GM12878_H3K27ac  | loaded         |      34 | 
| 1881 | Broad_2010-07-12_GM12878_H3K27me3 | loaded         |      34 | 
| 1882 | Broad_2010-07-12_GM12878_H3K36me3 | loaded         |      34 | 
| 1883 | Broad_2010-07-12_GM12878_H3K4me1  | loaded         |      34 | 
| 1884 | Broad_2010-07-12_GM12878_H3K4me2  | loaded         |      34 | 
| 1885 | Broad_2010-07-12_GM12878_H3K4me3  | loaded         |      34 | 
| 1886 | Broad_2010-07-12_GM12878_H3K9ac   | loaded         |      34 | 
| 1887 | Broad_2010-07-12_GM12878_H4K20me1 | loaded         |      34 | 
| 1888 | Broad_2010-07-12_NH-A_CTCF        | loaded         |      34 | 
| 1889 | Broad_2010-07-12_NH-A_Control     | load requested |      34 | 
| 1890 | Broad_2010-07-12_NH-A_H3K27ac     | load requested |      34 | 
| 1891 | Broad_2010-07-12_NH-A_H3K27me3    | loaded         |      34 | 
| 1892 | Broad_2010-07-12_NH-A_H3K36me3    | loaded         |      34 | 
| 1893 | Broad_2010-07-12_NH-A_H3K4me1     | load requested |      34 | 
| 1894 | Broad_2010-07-12_NH-A_H3K4me3     | loaded         |      34 | 
| 1895 | Broad_2010-07-12_H1-hESC          | loaded         |      34 | 
| 1896 | Broad_2010-07-12_K562             | loaded         |      34 | 
| 1897 | Broad_2010-07-12_HUVEC            | loaded         |      34 | 
| 1898 | Broad_2010-07-12_HeLa-S3          | loaded         |      34 | 
| 1899 | Broad_2010-07-12_HepG2            | loaded         |      34 | 
| 1900 | Broad_2010-07-12_HMEC             | loaded         |      34 | 
| 1901 | Broad_2010-07-12_HSMM             | loaded         |      34 | 
| 1902 | Broad_2010-07-12_HSMMtube         | loaded         |      34 | 
| 1903 | Broad_2010-07-12_NHEK             | loaded         |      34 | 
| 1922 | Broad_2010-07-13_HeLa-S3_Control  | loaded         |      34 | 
+------+-----------------------------------+----------------+---------+
28 rows in set (0.01 sec)

# load up the trackDb for GM12878 and NH-A only (others are already loaded)
cd {pip}
rm /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1878/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1879/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1880/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1881/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1882/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1883/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1884/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1885/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1886/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1887/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1888/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1889/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1890/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1891/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1892/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1893/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cat 1894/out/trackDb.ra >> /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/tmp.ra
cd /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/testing/
e tmp.ra
cd ..
encodePatchTdb testing/tmp.ra wgEncodeBroadHistone.ra

# Load metadata for GM12878 and NH-A (others are already loaded)
mdbUpdate hg19 1878/out/mdb.txt
mdbUpdate hg19 1879/out/mdb.txt
mdbUpdate hg19 1880/out/mdb.txt
mdbUpdate hg19 1881/out/mdb.txt
mdbUpdate hg19 1882/out/mdb.txt
mdbUpdate hg19 1883/out/mdb.txt
mdbUpdate hg19 1884/out/mdb.txt
mdbUpdate hg19 1885/out/mdb.txt
mdbUpdate hg19 1886/out/mdb.txt
mdbUpdate hg19 1887/out/mdb.txt
mdbUpdate hg19 1888/out/mdb.txt
mdbUpdate hg19 1889/out/mdb.txt
mdbUpdate hg19 1890/out/mdb.txt
mdbUpdate hg19 1891/out/mdb.txt
mdbUpdate hg19 1892/out/mdb.txt
mdbUpdate hg19 1893/out/mdb.txt
mdbUpdate hg19 1894/out/mdb.txt
Using table named 'hg19.metaDb_tdreszer'.
Read 3 metadata objects from hg19
Affected 59 row(s) in hg19.metaDb_tdreszer
...

# Update dates
cd /cluster/home/tdreszer/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing
mdbPrint hg18 -table=metaDb -vars="composite=wgEncodeBroadChipSeq cell=GM12878" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="grant,dataType,cell,antibody,view,replicate" -updVars="dateSubmitted,dateUnrestricted" > broadGM12878Dates.txt
objects:59  vars:1112
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="subId" -updVars="dateSubmitted" > broadGM12878Resub.txt
objects:30  vars:590
e broadGM12878*.txt# Add origAssembly=hg18 to broadGM12878Dates.txt. # Add select origAssembly=hg18, change dateSubmitted to dateResubmitted broadGM12878Resub.txt
chmod 755 broadGM12878*.txt
./broadGM12878Dates.txt
Affected 2 row(s) in hg19.metaDb_tdreszer
Affected 0 row(s) in hg19.metaDb_tdreszer
...

./broadGM12878Resub.txt
Affected 3 row(s) in hg19.metaDb_tdreszer
...

# update subId and dateResubmitted for all the resubmitted bams
mdbUpdate hg19 -table=mdb_tdreszer -recreate
mdbUpdate hg19 -table=mdb_tdreszer 1877/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1895/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1896/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1897/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1898/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1899/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1900/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1901/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1902/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1903/out/mdb.txt
mdbUpdate hg19 -table=mdb_tdreszer 1922/out/mdb.txt

mdbPrint hg19 -table=mdb_tdreszer -vars="view=Alignments" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="obj" -updVars="subId,dateSubmitted" > broadBams.txt
chmod 755 broadBams.txt 
./broadBams.txt
Affected 2 row(s) in hg19.metaDb_tdreszer
Affected 2 row(s) in hg19.metaDb_tdreszer
...

mdbPrint hg19 -table=mdb_tdreszer -vars="cell=HeLa-S3 antibody=Control" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect="obj" -updVars="subId,dateSubmitted" > broadBams2.txt
#which creates:
mdbUpdate hg19 table=metaDb_tdreszer -obj=wgEncodeBroadHistoneHelas3ControlStdSig -setVars="subId=1922 dateResubmitted=2010-07-13 "
Affected 2 row(s) in hg19.metaDb_tdreszer

cd ..
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:399  vars:8197
mdbUpdate hg19 -table=metaDb wgEncodeBroadHistone.ra
Read 399 metadata objects from hg19
Affected 1511 row(s) in hg19.metaDb

git add wgEncodeBroadHistone.ra 
git commit -m "Metadata update for resubmitted BAMs and 2 more cell lines"
git pull; git push
make alpha DBS=hg19

# oops set this to post freeze
mdbUpdate hg19 -vars="subId=1877" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1878" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1879" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1880" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1881" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1882" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1883" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1884" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1885" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1886" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1887" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1888" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1889" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1890" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1891" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1892" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1893" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1894" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1895" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1896" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1897" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1898" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1899" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1900" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1901" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1902" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1903" -var=dataVersion -val="post ENCODE June 2010 Freeze"
mdbUpdate hg19 -vars="subId=1922" -var=dataVersion -val="post ENCODE June 2010 Freeze"
Affected 34 row(s) in hg19.metaDb_tdreszer
...
cd ..
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
objects:399  vars:8197
git add wgEncodeBroadHistone.ra 
git commit -m "Oops.  These new things should be marked 'post' freeze"
git pull; git push
make alpha DBS=hg19

# Now downloads:
cd /usr/local/apache/htdocs-hgdownload/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
encodeDownloadsPage.pl -db=hg19 index.html -checksum &

/cluster/data/encode/pipeline/bin/encodeStatus.pl 1877 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1878 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1879 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1880 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1881 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1882 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1883 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1884 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1885 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1886 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1887 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1888 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1889 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1890 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1891 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1892 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1893 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1894 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1895 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1896 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1897 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1898 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1899 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1900 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1901 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1902 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1903 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1922 displayed


2010-10-22 Resubmit most of hg19
================================
cd {pip}/../ftp/prod/shoresh
ls -1 */tgz
BI_GM12878_CTCF.tgz
BI_GM12878_H3K4me3.tgz
BI_H1_H3K27ac.tgz
BI_HMEC_H3K9ac.tgz
BI_HMEC_H4K20me1.tgz
BI_HMEC_WCE.tgz
BI_HSMM-myotube_CTCF.tgz
BI_HSMM-myotube_H2A.Z.tgz
BI_HSMM-myotube_H3K27ac.tgz
BI_HSMM-myotube_H3K36me3.tgz
BI_HSMM-myotube_H3K4me1.tgz
BI_HSMM-myotube_H3K4me2.tgz
BI_HSMM-myotube_H3K4me3.tgz
BI_HSMM-myotube_H3K79me2.tgz
BI_HSMM-myotube_H3K9ac.tgz
BI_HSMM-myotube_WCE.tgz
BI_HSMM_H3K79me2.tgz
BI_HSMM_H3K9me3.tgz
BI_HeLaS3_CTCF.tgz
BI_HeLaS3_H3K27ac.tgz
BI_HeLaS3_H3K36me3.tgz
BI_HeLaS3_H3K4me2.tgz
BI_HeLaS3_H3K4me3.tgz
BI_HeLaS3_H3K79me2.tgz
BI_HeLaS3_H3K9ac.tgz
BI_HeLaS3_H4K20me1.tgz
BI_HeLaS3_RNA-pol2.tgz
BI_HeLaS3_WCE.tgz
BI_HepG2_H2A.Z.tgz
BI_HepG2_H3K27me3.tgz
BI_HepG2_H3K79me2.tgz
BI_Huvec_CTCF.tgz
BI_Huvec_H3K27ac.tgz
BI_Huvec_H3K27me3.tgz
BI_Huvec_H3K36me3.tgz
BI_Huvec_H3K4me1.tgz
BI_Huvec_H3K4me2.tgz
BI_Huvec_H3K4me3.tgz
BI_Huvec_H3K9ac.tgz
BI_Huvec_H3K9me1.tgz
BI_Huvec_H4K20me1.tgz
BI_Huvec_RNA-pol2.tgz
BI_Huvec_WCE.tgz
BI_K562_CTCF.tgz
BI_K562_H3K27ac.tgz
BI_K562_H3K36me3.tgz
BI_K562_H3K4me1.tgz
BI_K562_H3K4me2.tgz
BI_K562_H3K9me1.tgz
BI_K562_H4K20me1.tgz
BI_K562_RNA-pol2.tgz
BI_K562_WCE.tgz
BI_NH-A_CTCF.tgz
BI_NH-A_H3K27ac.tgz
BI_NH-A_H3K27me3.tgz
BI_NH-A_H3K4me1.tgz
BI_NH-A_H3K4me3.tgz
BI_NH-A_WCE.tgz
BI_NHEK_CTCF.tgz
BI_NHEK_H3K27ac.tgz
BI_NHEK_H3K27me3.tgz
BI_NHEK_H3K36me3.tgz
BI_NHEK_H3K4me1.tgz
BI_NHEK_H3K4me2.tgz
BI_NHEK_H3K4me3.tgz
BI_NHEK_H3K9ac.tgz
BI_NHEK_H3K9me1.tgz
BI_NHEK_H4K20me1.tgz
BI_NHEK_RNA-pol2.tgz
BI_NHEK_WCE.tgz
BI_NHLF_H3K4me2.tgz

# convert to submission dir names:
Broad 2010-10-22 GM12878 CTCF
Broad 2010-10-22 GM12878 H3K4me3
Broad 2010-10-22 H1 H3K27ac
Broad 2010-10-22 HMEC H3K9ac
Broad 2010-10-22 HMEC H4K20me1
Broad 2010-10-22 HMEC WCE
Broad 2010-10-22 HSMM-myotube CTCF
Broad 2010-10-22 HSMM-myotube H2A.Z
Broad 2010-10-22 HSMM-myotube H3K27ac
Broad 2010-10-22 HSMM-myotube H3K36me3
Broad 2010-10-22 HSMM-myotube H3K4me1
Broad 2010-10-22 HSMM-myotube H3K4me2
Broad 2010-10-22 HSMM-myotube H3K4me3
Broad 2010-10-22 HSMM-myotube H3K79me2
Broad 2010-10-22 HSMM-myotube H3K9ac
Broad 2010-10-22 HSMM-myotube WCE
Broad 2010-10-22 HSMM H3K79me2
Broad 2010-10-22 HSMM H3K9me3
Broad 2010-10-22 HeLaS3 CTCF
Broad 2010-10-22 HeLaS3 H3K27ac
Broad 2010-10-22 HeLaS3 H3K36me3
Broad 2010-10-22 HeLaS3 H3K4me2
Broad 2010-10-22 HeLaS3 H3K4me3
Broad 2010-10-22 HeLaS3 H3K79me2
Broad 2010-10-22 HeLaS3 H3K9ac
Broad 2010-10-22 HeLaS3 H4K20me1
Broad 2010-10-22 HeLaS3 RNA-pol2
Broad 2010-10-22 HeLaS3 WCE
Broad 2010-10-22 HepG2 H2A.Z
Broad 2010-10-22 HepG2 H3K27me3
Broad 2010-10-22 HepG2 H3K79me2
Broad 2010-10-22 Huvec CTCF
Broad 2010-10-22 Huvec H3K27ac
Broad 2010-10-22 Huvec H3K27me3
Broad 2010-10-22 Huvec H3K36me3
Broad 2010-10-22 Huvec H3K4me1
Broad 2010-10-22 Huvec H3K4me2
Broad 2010-10-22 Huvec H3K4me3
Broad 2010-10-22 Huvec H3K9ac
Broad 2010-10-22 Huvec H3K9me1
Broad 2010-10-22 Huvec H4K20me1
Broad 2010-10-22 Huvec RNA-pol2
Broad 2010-10-22 Huvec WCE
Broad 2010-10-22 K562 CTCF
Broad 2010-10-22 K562 H3K27ac
Broad 2010-10-22 K562 H3K36me3
Broad 2010-10-22 K562 H3K4me1
Broad 2010-10-22 K562 H3K4me2
Broad 2010-10-22 K562 H3K9me1
Broad 2010-10-22 K562 H4K20me1
Broad 2010-10-22 K562 RNA-pol2
Broad 2010-10-22 K562 WCE
Broad 2010-10-22 NH-A CTCF
Broad 2010-10-22 NH-A H3K27ac
Broad 2010-10-22 NH-A H3K27me3
Broad 2010-10-22 NH-A H3K4me1
Broad 2010-10-22 NH-A H3K4me3
Broad 2010-10-22 NH-A WCE
Broad 2010-10-22 NHEK CTCF
Broad 2010-10-22 NHEK H3K27ac
Broad 2010-10-22 NHEK H3K27me3
Broad 2010-10-22 NHEK H3K36me3
Broad 2010-10-22 NHEK H3K4me1
Broad 2010-10-22 NHEK H3K4me2
Broad 2010-10-22 NHEK H3K4me3
Broad 2010-10-22 NHEK H3K9ac
Broad 2010-10-22 NHEK H3K9me1
Broad 2010-10-22 NHEK H4K20me1
Broad 2010-10-22 NHEK RNA-pol2
Broad 2010-10-22 NHEK WCE
Broad 2010-10-22 NHLF H3K4me2

# Already submitted 2551 with fastq only.  Edit daf and resubmit
# Worked.

# Which archives are fastq only? What is hg19 only?
HeLa-S3, HSMMtube, NH-A
H1_H3K27ac
HepG2 H3K27me3 BAM and BW!!!!!!!
HepG2 H2A.Z
HepG2 H3K79me2
HSMM H3K9me3
HSMM H3K79me2

# Start submitting:
Broad 2010-10-22 HSMM-myotube CTCF
Broad 2010-10-22 HSMM-myotube H2A.Z
Broad 2010-10-22 HSMM-myotube H3K27ac
Broad 2010-10-22 HSMM-myotube H3K36me3
Broad 2010-10-22 HSMM-myotube H3K4me1
Broad 2010-10-22 HSMM-myotube H3K4me2
Broad 2010-10-22 HSMM-myotube H3K4me3
Broad 2010-10-22 HSMM-myotube H3K79me2
Broad 2010-10-22 HSMM-myotube H3K9ac
Broad 2010-10-22 HSMM-myotube WCE

Broad 2010-10-22 HeLaS3 CTCF
Broad 2010-10-22 HeLaS3 H3K27ac
Broad 2010-10-22 HeLaS3 H3K36me3
Broad 2010-10-22 HeLaS3 H3K4me2
Broad 2010-10-22 HeLaS3 H3K4me3
Broad 2010-10-22 HeLaS3 H3K79me2
Broad 2010-10-22 HeLaS3 H3K9ac
Broad 2010-10-22 HeLaS3 H4K20me1
Broad 2010-10-22 HeLaS3 RNA-pol2
Broad 2010-10-22 HeLaS3 WCE

Broad 2010-10-22 NH-A CTCF
Broad 2010-10-22 NH-A H3K27ac
Broad 2010-10-22 NH-A H3K27me3
Broad 2010-10-22 NH-A H3K4me1
Broad 2010-10-22 NH-A H3K4me3
Broad 2010-10-22 NH-A WCE

Broad 2010-10-22 H1 H3K27ac
Broad 2010-10-22 HepG2 H2A.Z
Broad 2010-10-22 HepG2 H3K79me2
Broad 2010-10-22 HSMM H3K79me2
Broad 2010-10-22 HSMM H3K9me3

select id,name,status from projects where name like "Broad 2010-10-22%" order by id;
+------+-----------------------------------------+--------------------+
| id   | name                                    | status             |
+------+-----------------------------------------+--------------------+
| 2551 | Broad 2010-10-22 HSMM-myotube H4K20me1  | loaded             | 
| 2560 | Broad 2010-10-22 HSMM-myotube CTCF      | validate failed    | 
| 2561 | Broad 2010-10-22 HSMM-myotube H2A.Z     | validate failed    | 
| 2562 | Broad 2010-10-22 HSMM-myotube H3K27ac   | validate failed    | 
| 2563 | Broad 2010-10-22 HSMM-myotube H3K36me3  | validate failed    | 
| 2564 | Broad 2010-10-22 HSMM-myotube H3K4me1   | validate failed    | 
| 2565 | Broad 2010-10-22 HSMM-myotube H3K4me2   | validate failed    | 
| 2566 | Broad 2010-10-22 HSMM-myotube H3K4me3   | validating         | 
| 2567 | Broad 2010-10-22 HSMM-myotube H3K79me2  | validating         | 
| 2568 | Broad 2010-10-22 HSMM-myotube H3K9ac    | validating         | 
| 2569 | Broad 2010-10-22 HSMM-myotube WCE       | validate requested | 
| 2570 | Broad 2010-10-22 HeLaS3 H3K27ac         | validate requested | 
| 2571 | Broad 2010-10-22 HeLaS3 H3K36me3        | validate requested | 
| 2572 | Broad 2010-10-22 HeLaS3 H3K4me2         | validate requested | 
| 2573 | Broad 2010-10-22 HeLaS3 H3K4me3         | validate requested | 
| 2574 | Broad 2010-10-22 HeLaS3 H3K79me2        | validate requested | 
| 2575 | Broad 2010-10-22 HeLaS3 H3K9ac          | validate requested | 
| 2576 | Broad 2010-10-22 HeLaS3 H4K20me1        | validate requested | 
| 2577 | Broad 2010-10-22 HeLaS3 RNA-pol2        | validate requested | 
| 2578 | Broad 2010-10-22 HeLaS3 WCE             | expanding          | 
| 2579 | Broad 2010-10-22 HeLaS3 CTCF            | validate requested | 
| 2580 | Broad 2010-10-22 NH-A CTCF              | validate requested | 
| 2581 | Broad 2010-10-22 NH-A H3K27ac           | validate requested | 
| 2582 | Broad 2010-10-22 NH-A H3K27me3          | validate requested | 
| 2583 | Broad 2010-10-22 NH-A H3K4me1           | validate requested | 
| 2584 | Broad 2010-10-22 NH-A H3K4me3           | validate requested | 
| 2585 | Broad 2010-10-22 NH-A WCE               | expanding          | 
| 2586 | Broad 2010-10-22 H1 H3K27ac             | validate requested | 
| 2587 | Broad 2010-10-22 HepG2 H2A.Z            | validate requested | 
| 2588 | Broad 2010-10-22 HepG2 H3K79me2         | expanding          | 
| 2589 | Broad 2010-10-22 HSMM H3K79me2          | expanding          | 
| 2590 | Broad 2010-10-22 HSMM H3K9me3           | expanding          | 
+------+-----------------------------------------+--------------------+
32 rows in set (0.01 sec)

cd pip/2551
cp broadHistoneFastq.daf ../2560
cp broadHistoneFastq.daf ../2561
cp broadHistoneFastq.daf ../2562
cp broadHistoneFastq.daf ../2563
cp broadHistoneFastq.daf ../2564
cp broadHistoneFastq.daf ../2565
cp broadHistoneFastq.daf ../2566
cp broadHistoneFastq.daf ../2567
cp broadHistoneFastq.daf ../2568
cp broadHistoneFastq.daf ../2569
cp broadHistoneFastq.daf ../2570
cp broadHistoneFastq.daf ../2571
cp broadHistoneFastq.daf ../2572
cp broadHistoneFastq.daf ../2573
cp broadHistoneFastq.daf ../2574
cp broadHistoneFastq.daf ../2575
cp broadHistoneFastq.daf ../2576
cp broadHistoneFastq.daf ../2577
cp broadHistoneFastq.daf ../2578
cp broadHistoneFastq.daf ../2579
cp broadHistoneFastq.daf ../2580
cp broadHistoneFastq.daf ../2581
cp broadHistoneFastq.daf ../2582
cp broadHistoneFastq.daf ../2583
cp broadHistoneFastq.daf ../2584
cp broadHistoneFastq.daf ../2585
cp broadHistoneFastq.daf ../2586
cp broadHistoneFastq.daf ../2587
cp broadHistoneFastq.daf ../2588
cp broadHistoneFastq.daf ../2589
cp broadHistoneFastq.daf ../2590
# Revalidate all and all loaded!

# now metadata
cd {pip}
mdbUpdate hg19 2551/out/mdb.txt
mdbUpdate hg19 2560/out/mdb.txt
mdbUpdate hg19 2561/out/mdb.txt
mdbUpdate hg19 2562/out/mdb.txt
mdbUpdate hg19 2563/out/mdb.txt
mdbUpdate hg19 2564/out/mdb.txt
mdbUpdate hg19 2565/out/mdb.txt
mdbUpdate hg19 2566/out/mdb.txt
mdbUpdate hg19 2567/out/mdb.txt
mdbUpdate hg19 2568/out/mdb.txt
mdbUpdate hg19 2569/out/mdb.txt
mdbUpdate hg19 2570/out/mdb.txt
mdbUpdate hg19 2571/out/mdb.txt
mdbUpdate hg19 2572/out/mdb.txt
mdbUpdate hg19 2573/out/mdb.txt
mdbUpdate hg19 2574/out/mdb.txt
mdbUpdate hg19 2575/out/mdb.txt
mdbUpdate hg19 2576/out/mdb.txt
mdbUpdate hg19 2577/out/mdb.txt
mdbUpdate hg19 2578/out/mdb.txt
mdbUpdate hg19 2579/out/mdb.txt
mdbUpdate hg19 2580/out/mdb.txt
mdbUpdate hg19 2581/out/mdb.txt
mdbUpdate hg19 2582/out/mdb.txt
mdbUpdate hg19 2583/out/mdb.txt
mdbUpdate hg19 2584/out/mdb.txt
mdbUpdate hg19 2585/out/mdb.txt
mdbUpdate hg19 2586/out/mdb.txt
mdbUpdate hg19 2587/out/mdb.txt
mdbUpdate hg19 2588/out/mdb.txt
mdbUpdate hg19 2589/out/mdb.txt
mdbUpdate hg19 2590/out/mdb.txt
cd {tdb}/human/hg19/metaDb/alpha
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra
# verify changes
git ci; git push
cd {tdb}
make DBS=hg19
make alpha DBS=hg19

#update downloads index.html
cd {downloads19}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
grep fastq\.gz index.html | wl  # 64 GOOD
# Don't bother with -checksum until resubmissions are added.

# mark as displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2551 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2560 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2561 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2562 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2563 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2564 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2565 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2566 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2567 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2568 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2569 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2570 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2571 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2572 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2573 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2574 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2575 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2576 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2577 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2578 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2579 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2580 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2581 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2582 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2583 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2584 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2585 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2586 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2587 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2588 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2589 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2590 displayed

-------------------------- Renamed Reps for fastq links
HepG2	CTCF	rep1	rep2
HepG2	CTCF	rep2	rep1
HepG2	H3K27ac	rep1	rep2
HepG2	H3K27ac	rep2	rep1
HepG2	H3K36me3	rep1	rep2
HepG2	H3K36me3	rep2	rep1
HepG2	H3K4me3	rep1	rep2
HepG2	H3K4me3	rep2	rep1
HepG2	H3K9ac	rep1	rep2
HepG2	H3K9ac	rep2	rep1
HepG2	H4K20me1	rep1	rep2
HepG2	H4K20me1	rep2	rep1
HepG2	Control	rep1	rep2
HepG2	Control	rep2	rep1
HMEC	CTCF	rep1	rep2
HMEC	CTCF	rep2	rep1
HMEC	H3K4me1	rep1	rep2
HMEC	H3K4me1	rep2	rep1
HSMM	CTCF	rep1	rep2
HSMM	CTCF	rep2	rep1
HSMM	H3K27ac	rep1	rep2
HSMM	H3K27ac	rep2	rep1
HSMM	H3K27me3	rep1	rep2
HSMM	H3K27me3	rep2	rep1
HSMM	H3K36me3	rep1	rep2
HSMM	H3K36me3	rep2	rep1
HSMM	H3K4me1	rep1	rep2
HSMM	H3K4me1	rep2	rep1
HSMM	H3K4me2	rep1	rep2
HSMM	H3K4me2	rep2	rep1
HSMM	H3K4me3	rep1	rep2
HSMM	H3K4me3	rep2	rep1
HSMM	H3K9ac	rep1	rep2
HSMM	H3K9ac	rep2	rep1
HSMM	H4K20me1	rep1	rep2
HSMM	H4K20me1	rep2	rep1
HSMM	Control	rep1	rep2
HSMM	Control	rep2	rep1
HUVEC	H3K27me3	rep2	rep1  # hg19 rep1 resubmitted 
HUVEC	H3K4me2	rep2	rep1      # hg19 rep1 resubmitted 
K562	H3K4me3	rep1	rep2
K562	H3K4me3	rep2	rep1
NHEK	Pol2(b)	rep2	rep1  # hg19 rep1 resubmitted 
NHEK	Control	rep2	rep1  # hg19 rep1 resubmitted 
NHLF	CTCF	rep1	rep2
NHLF	CTCF	rep2	rep1
NHLF	H3K27ac	rep1	rep2
NHLF	H3K27ac	rep2	rep1
NHLF	H3K36me3	rep1	rep2
NHLF	H3K36me3	rep2	rep1
NHLF	H3K4me1	rep1	rep2
NHLF	H3K4me1	rep2	rep1
#NHLF	H3K4me2	rep2	rep1  # hg19 rep1,2,3 resubmitted Thus no remapping needed
NHLF	H3K4me3	rep1	rep2
NHLF	H3K4me3	rep2	rep1
NHLF	H4K20me1	rep1	rep2
NHLF	H4K20me1	rep2	rep1
-------------------------- Renamed Reps for fastq links

# ln to hg18.  What about metadata???   DONE: hg18 file names verified.  hg19 named BAMs are verified.
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2Ctcf.fastq.gz wgEncodeBroadHistoneHepg2CtcfStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2Ctcf.fastq.gz wgEncodeBroadHistoneHepg2CtcfStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H3k27ac.fastq.gz wgEncodeBroadHistoneHepg2H3k27acStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H3k27ac.fastq.gz wgEncodeBroadHistoneHepg2H3k27acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H3k36me3.fastq.gz wgEncodeBroadHistoneHepg2H3k36me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H3k36me3.fastq.gz wgEncodeBroadHistoneHepg2H3k36me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H3k4me3.fastq.gz wgEncodeBroadHistoneHepg2H3k4me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H3k4me3.fastq.gz wgEncodeBroadHistoneHepg2H3k4me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H3k9ac.fastq.gz wgEncodeBroadHistoneHepg2H3k9acStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H3k9ac.fastq.gz wgEncodeBroadHistoneHepg2H3k9acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H4k20me1.fastq.gz wgEncodeBroadHistoneHepg2H4k20me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H4k20me1.fastq.gz wgEncodeBroadHistoneHepg2H4k20me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2Control.fastq.gz wgEncodeBroadHistoneHepg2ControlStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2Control.fastq.gz wgEncodeBroadHistoneHepg2ControlStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecCtcf.fastq.gz wgEncodeBroadHistoneHmecCtcfStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecCtcf.fastq.gz wgEncodeBroadHistoneHmecCtcfStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k4me1.fastq.gz wgEncodeBroadHistoneHmecH3k4me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k4me1.fastq.gz wgEncodeBroadHistoneHmecH3k4me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmCtcf.fastq.gz wgEncodeBroadHistoneHsmmCtcfStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmCtcf.fastq.gz wgEncodeBroadHistoneHsmmCtcfStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k27ac.fastq.gz wgEncodeBroadHistoneHsmmH3k27acStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k27ac.fastq.gz wgEncodeBroadHistoneHsmmH3k27acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k27me3.fastq.gz wgEncodeBroadHistoneHsmmH3k27me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k27me3.fastq.gz wgEncodeBroadHistoneHsmmH3k27me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k36me3.fastq.gz wgEncodeBroadHistoneHsmmH3k36me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k36me3.fastq.gz wgEncodeBroadHistoneHsmmH3k36me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me1.fastq.gz wgEncodeBroadHistoneHsmmH3k4me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me1.fastq.gz wgEncodeBroadHistoneHsmmH3k4me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me2.fastq.gz wgEncodeBroadHistoneHsmmH3k4me2StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me2.fastq.gz wgEncodeBroadHistoneHsmmH3k4me2StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me3.fastq.gz wgEncodeBroadHistoneHsmmH3k4me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me3.fastq.gz wgEncodeBroadHistoneHsmmH3k4me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH3k9ac.fastq.gz wgEncodeBroadHistoneHsmmH3k9acStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH3k9ac.fastq.gz wgEncodeBroadHistoneHsmmH3k9acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmH4k20me1.fastq.gz wgEncodeBroadHistoneHsmmH4k20me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmH4k20me1.fastq.gz wgEncodeBroadHistoneHsmmH4k20me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HsmmControl.fastq.gz wgEncodeBroadHistoneHsmmControlStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HsmmControl.fastq.gz wgEncodeBroadHistoneHsmmControlStdRawDataRep2.fastq.gz
###ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HuvecH3k27me3.fastq.gz wgEncodeBroadHistoneHuvecH3k27me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HuvecH3k27me3.fastq.gz wgEncodeBroadHistoneHuvecH3k27me3StdRawDataRep2.fastq.gz
###ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HuvecH3k4me2.fastq.gz wgEncodeBroadHistoneHuvecH3k4me2StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HuvecH3k4me2.fastq.gz wgEncodeBroadHistoneHuvecH3k4me2StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k4me3.fastq.gz wgEncodeBroadHistoneK562H3k4me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1K562H3k4me3.fastq.gz wgEncodeBroadHistoneK562H3k4me3StdRawDataRep2.fastq.gz
###ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhekPol2b.fastq.gz wgEncodeBroadHistoneNhekPol2bStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhekPol2b.fastq.gz wgEncodeBroadHistoneNhekPol2bStdRawDataRep2.fastq.gz
###ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhekControl.fastq.gz wgEncodeBroadHistoneNhekControlStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhekControl.fastq.gz wgEncodeBroadHistoneNhekControlStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfCtcf.fastq.gz wgEncodeBroadHistoneNhlfCtcfStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfCtcf.fastq.gz wgEncodeBroadHistoneNhlfCtcfStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k27ac.fastq.gz wgEncodeBroadHistoneNhlfH3k27acStdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k27ac.fastq.gz wgEncodeBroadHistoneNhlfH3k27acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k36me3.fastq.gz wgEncodeBroadHistoneNhlfH3k36me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k36me3.fastq.gz wgEncodeBroadHistoneNhlfH3k36me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me1.fastq.gz wgEncodeBroadHistoneNhlfH3k4me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me1.fastq.gz wgEncodeBroadHistoneNhlfH3k4me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me2.fastq.gz wgEncodeBroadHistoneNhlfH3k4me2StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me2.fastq.gz wgEncodeBroadHistoneNhlfH3k4me2StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me3.fastq.gz wgEncodeBroadHistoneNhlfH3k4me3StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me3.fastq.gz wgEncodeBroadHistoneNhlfH3k4me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH4k20me1.fastq.gz wgEncodeBroadHistoneNhlfH4k20me1StdRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH4k20me1.fastq.gz wgEncodeBroadHistoneNhlfH4k20me1StdRawDataRep2.fastq.gz

# Not changed since hg18:
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878Control.fastq.gz  wgEncodeBroadHistoneGm12878ControlRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878Control.fastq.gz  wgEncodeBroadHistoneGm12878ControlRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k27ac.fastq.gz  wgEncodeBroadHistoneGm12878H3k27acRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k27ac.fastq.gz  wgEncodeBroadHistoneGm12878H3k27acRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k27me3.fastq.gz wgEncodeBroadHistoneGm12878H3k27me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k27me3.fastq.gz wgEncodeBroadHistoneGm12878H3k27me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k36me3.fastq.gz wgEncodeBroadHistoneGm12878H3k36me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k36me3.fastq.gz wgEncodeBroadHistoneGm12878H3k36me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k4me1.fastq.gz  wgEncodeBroadHistoneGm12878H3k4me1RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me1.fastq.gz  wgEncodeBroadHistoneGm12878H3k4me1RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k4me2.fastq.gz  wgEncodeBroadHistoneGm12878H3k4me2RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me2.fastq.gz  wgEncodeBroadHistoneGm12878H3k4me2RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H3k9ac.fastq.gz   wgEncodeBroadHistoneGm12878H3k9acRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k9ac.fastq.gz   wgEncodeBroadHistoneGm12878H3k9acRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878H4k20me1.fastq.gz wgEncodeBroadHistoneGm12878H4k20me1RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H4k20me1.fastq.gz wgEncodeBroadHistoneGm12878H4k20me1RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescControl.fastq.gz   wgEncodeBroadHistoneH1hescControlRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescControl.fastq.gz   wgEncodeBroadHistoneH1hescControlRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescCtcf.fastq.gz      wgEncodeBroadHistoneH1hescCtcfRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescCtcf.fastq.gz      wgEncodeBroadHistoneH1hescCtcfRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k27me3.fastq.gz  wgEncodeBroadHistoneH1hescH3k27me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k27me3.fastq.gz  wgEncodeBroadHistoneH1hescH3k27me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k36me3.fastq.gz  wgEncodeBroadHistoneH1hescH3k36me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k36me3.fastq.gz  wgEncodeBroadHistoneH1hescH3k36me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me1.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me1RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me1.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me1RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me2.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me2RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me2.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me2RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me3.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me3.fastq.gz   wgEncodeBroadHistoneH1hescH3k4me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH3k9ac.fastq.gz    wgEncodeBroadHistoneH1hescH3k9acRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH3k9ac.fastq.gz    wgEncodeBroadHistoneH1hescH3k9acRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1H1hescH4k20me1.fastq.gz  wgEncodeBroadHistoneH1hescH4k20me1RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2H1hescH4k20me1.fastq.gz  wgEncodeBroadHistoneH1hescH4k20me1RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Hepg2H3k4me2.fastq.gz    wgEncodeBroadHistoneHepg2H3k4me2RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Hepg2H3k4me2.fastq.gz    wgEncodeBroadHistoneHepg2H3k4me2RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k27ac.fastq.gz     wgEncodeBroadHistoneHmecH3k27acRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k27ac.fastq.gz     wgEncodeBroadHistoneHmecH3k27acRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k27me3.fastq.gz    wgEncodeBroadHistoneHmecH3k27me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k27me3.fastq.gz    wgEncodeBroadHistoneHmecH3k27me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k36me3.fastq.gz    wgEncodeBroadHistoneHmecH3k36me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k36me3.fastq.gz    wgEncodeBroadHistoneHmecH3k36me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k4me2.fastq.gz     wgEncodeBroadHistoneHmecH3k4me2RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k4me2.fastq.gz     wgEncodeBroadHistoneHmecH3k4me2RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1HmecH3k4me3.fastq.gz     wgEncodeBroadHistoneHmecH3k4me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k4me3.fastq.gz     wgEncodeBroadHistoneHmecH3k4me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1K562H3k27me3.fastq.gz    wgEncodeBroadHistoneK562H3k27me3RawDataRep1.fastq.gz 
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k27me3.fastq.gz    wgEncodeBroadHistoneK562H3k27me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1K562H3k9ac.fastq.gz      wgEncodeBroadHistoneK562H3k9acRawDataRep1.fastq.gz 
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k9ac.fastq.gz      wgEncodeBroadHistoneK562H3k9acRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfControl.fastq.gz     wgEncodeBroadHistoneNhlfControlRawDataRep1.fastq.gz 
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfControl.fastq.gz     wgEncodeBroadHistoneNhlfControlRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k27me3.fastq.gz    wgEncodeBroadHistoneNhlfH3k27me3RawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k27me3.fastq.gz    wgEncodeBroadHistoneNhlfH3k27me3RawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1NhlfH3k9ac.fastq.gz      wgEncodeBroadHistoneNhlfH3k9acRawDataRep1.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2NhlfH3k9ac.fastq.gz      wgEncodeBroadHistoneNhlfH3k9acRawDataRep2.fastq.gz

### Perhaps it is best to make a new submission of these
# PRO) Takes care of metadata
# CON) Dups data and looses dates

# Then how to import mdb entries to hg19
# 1) mdbPrint from hg18
# 2) edit to change metaObject, fileName, composite, parentTable, control, origAssembly names names
#    DONE metaObject, fileName, composite, parentTable, control, origAssembly
# 3) mdbUpdate to hg19
cd {tdb}/human/hg19/metaDb/alpha/testing
rm importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2Ctcf      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2Ctcf      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H3k27ac   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H3k27ac   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H3k36me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H3k36me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H3k4me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H3k4me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H3k9ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H3k9ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H4k20me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H4k20me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2Control   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2Control   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k27ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k27ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k27me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k27me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k36me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k36me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH3k9ac     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH3k9ac     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmH4k20me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmH4k20me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HsmmControl    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HsmmControl    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HuvecH3k27me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HuvecH3k4me2   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1K562H3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhekPol2b      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhekControl    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfCtcf       >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k27ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k27ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k36me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k36me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me1    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k4me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH4k20me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH4k20me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878Control >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878Control >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k27ac >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k27ac >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k27me3 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k27me3 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k36me3 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k36me3 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k4me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k4me2  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me2  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H3k9ac   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k9ac   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878H4k20me1 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H4k20me1 >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescControl   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescControl   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescCtcf      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescCtcf      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k27me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k27me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k36me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k36me3  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me1   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me2   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me2   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k4me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k4me3   >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH3k9ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH3k9ac    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1H1hescH4k20me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2H1hescH4k20me1  >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Hepg2H3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Hepg2H3k4me2    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k27ac     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k27ac     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k36me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k36me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k4me2     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k4me2     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1HmecH3k4me3     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k4me3     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1K562H3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1K562H3k9ac      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k9ac      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfControl     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfControl     >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k27me3    >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1NhlfH3k9ac      >> importBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2NhlfH3k9ac      >> importBroadhg18Tohg19.ra
mdbUpdate hg19 importBroadhg18Tohg19.ra 

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra
# verify changes
git ci; git push
cd {tdb}
make DBS=hg19
make alpha DBS=hg19

#update downloads index.html
cd {downloads19}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
grep fastq\.gz index.html | wl  # 178: 64 + 114 as EXPECTED Total 849 files!
# Don't bother with -checksum until resubmissions are added.



### TODO: Resubmissions:
Broad 2010-10-22 GM12878 CTCF
Broad 2010-10-22 GM12878 H3K4me3

Broad 2010-10-22 HMEC H3K9ac
Broad 2010-10-22 HMEC H4K20me1
Broad 2010-10-22 HMEC WCE

Broad 2010-10-22 HepG2 H3K27me3 ???

Broad 2010-10-22 Huvec CTCF
Broad 2010-10-22 Huvec H3K27ac
Broad 2010-10-22 Huvec H3K27me3
Broad 2010-10-22 Huvec H3K36me3
Broad 2010-10-22 Huvec H3K4me1
Broad 2010-10-22 Huvec H3K4me2
Broad 2010-10-22 Huvec H3K4me3
Broad 2010-10-22 Huvec H3K9ac
Broad 2010-10-22 Huvec H3K9me1
Broad 2010-10-22 Huvec H4K20me1
Broad 2010-10-22 Huvec RNA-pol2
Broad 2010-10-22 Huvec WCE

Broad 2010-10-22 K562 CTCF
Broad 2010-10-22 K562 H3K27ac
Broad 2010-10-22 K562 H3K36me3
Broad 2010-10-22 K562 H3K4me1
Broad 2010-10-22 K562 H3K4me2
Broad 2010-10-22 K562 H3K9me1
Broad 2010-10-22 K562 H4K20me1
Broad 2010-10-22 K562 RNA-pol2
Broad 2010-10-22 K562 WCE

Broad 2010-10-22 NHEK CTCF
Broad 2010-10-22 NHEK H3K27ac
Broad 2010-10-22 NHEK H3K27me3
Broad 2010-10-22 NHEK H3K36me3
Broad 2010-10-22 NHEK H3K4me1
Broad 2010-10-22 NHEK H3K4me2
Broad 2010-10-22 NHEK H3K4me3
Broad 2010-10-22 NHEK H3K9ac
Broad 2010-10-22 NHEK H3K9me1
Broad 2010-10-22 NHEK H4K20me1
Broad 2010-10-22 NHEK RNA-pol2
Broad 2010-10-22 NHEK WCE

Broad 2010-10-22 NHLF H3K4me2

### Use Galt's new mass submission
# Edit all ddfs: Alignment => Alignments and add "Signal" for signal view
# Edit all dafs to allowReloads
# Restart all
select id,name,status,user_id from projects where name like "BI_%" order by id ;
+------+--------------------+---------+---------+
| id   | name               | status  | user_id |
+------+--------------------+---------+---------+
| 2723 | BI_GM12878_CTCF    | loaded  |      34 | 
| 2724 | BI_GM12878_H3K4me3 | loaded  |      34 | 
| 2725 | BI_HMEC_H3K9ac     | loaded  |      34 | 
| 2726 | BI_HMEC_H4K20me1   | loaded  |      34 | 
| 2727 | BI_HMEC_WCE        | loaded  |      34 | 
| 2728 | BI_HepG2_H3K27me3  | loaded  |      34 | 
| 2729 | BI_Huvec_CTCF      | loaded  |      34 | 
| 2730 | BI_Huvec_H3K27ac   | loaded  |      34 | 
| 2731 | BI_Huvec_H3K27me3  | loaded  |      34 | 
| 2732 | BI_Huvec_H3K36me3  | loaded  |      34 | 
| 2733 | BI_Huvec_H3K4me1   | loaded  |      34 | 
| 2734 | BI_Huvec_H3K4me2   | loaded  |      34 | 
| 2735 | BI_Huvec_H3K4me3   | loaded  |      34 | 
| 2736 | BI_Huvec_H3K9ac    | loaded  |      34 | 
| 2737 | BI_Huvec_H3K9me1   | loaded  |      34 | 
| 2738 | BI_Huvec_H4K20me1  | loaded  |      34 | 
| 2739 | BI_Huvec_RNA-pol2  | loaded  |      34 | 
| 2740 | BI_Huvec_WCE       | loaded  |      34 | 
| 2741 | BI_K562_CTCF       | loaded  |      34 | 
| 2742 | BI_K562_H3K27ac    | loaded  |      34 | 
| 2743 | BI_K562_H3K36me3   | loaded  |      34 | 
| 2744 | BI_K562_H3K4me1    | loaded  |      34 | 
| 2745 | BI_K562_H3K4me2    | loaded  |      34 | 
| 2746 | BI_K562_H3K9me1    | loaded  |      34 | 
| 2747 | BI_K562_H4K20me1   | loaded  |      34 | 
| 2748 | BI_K562_RNA-pol2   | loaded  |      34 | 
| 2749 | BI_K562_WCE        | loaded  |      34 | 
| 2750 | BI_NHEK_CTCF       | loaded  |      34 | 
| 2751 | BI_NHEK_H3K27ac    | loaded  |      34 | 
| 2752 | BI_NHEK_H3K27me3   | loaded  |      34 | 
| 2753 | BI_NHEK_H3K36me3   | loaded  |      34 | 
| 2754 | BI_NHEK_H3K4me1    | loaded  |      34 | 
| 2755 | BI_NHEK_H3K4me2    | loaded  |      34 | 
| 2756 | BI_NHEK_H3K4me3    | loaded  |      34 | 
| 2757 | BI_NHEK_H3K9ac     | loaded  |      34 | 
| 2758 | BI_NHEK_H3K9me1    | loaded  |      34 | 
| 2759 | BI_NHEK_H4K20me1   | loaded  |      34 | 
| 2760 | BI_NHEK_RNA-pol2   | loaded  |      34 | 
| 2761 | BI_NHEK_WCE        | loaded  |      34 | 
| 2762 | BI_NHLF_H3K4me2    | loaded  |      34 | 
update projects set name = "Broad 2010-10-26 GM12878 CTCF" where id = 2723;
update projects set name = "Broad 2010-10-26 GM12878 H3K4me3" where id = 2724;
update projects set name = "Broad 2010-10-26 HMEC H3K9ac" where id = 2725;
update projects set name = "Broad 2010-10-26 HMEC H4K20me1" where id = 2726;
update projects set name = "Broad 2010-10-26 HMEC WCE" where id = 2727;
update projects set name = "Broad 2010-10-26 HepG2 H3K27me3" where id = 2728;
update projects set name = "Broad 2010-10-26 Huvec CTCF" where id = 2729;
update projects set name = "Broad 2010-10-26 Huvec H3K27ac" where id = 2730;
update projects set name = "Broad 2010-10-26 Huvec H3K27me3" where id = 2731;
update projects set name = "Broad 2010-10-26 Huvec H3K36me3" where id = 2732;
update projects set name = "Broad 2010-10-26 Huvec H3K4me1" where id = 2733;
update projects set name = "Broad 2010-10-26 Huvec H3K4me2" where id = 2734;
update projects set name = "Broad 2010-10-26 Huvec H3K4me3" where id = 2735;
update projects set name = "Broad 2010-10-26 Huvec H3K9ac" where id = 2736;
update projects set name = "Broad 2010-10-26 Huvec H3K9me1" where id = 2737;
update projects set name = "Broad 2010-10-26 Huvec H4K20me1" where id = 2738;
update projects set name = "Broad 2010-10-26 Huvec RNA-pol2" where id = 2739;
update projects set name = "Broad 2010-10-26 Huvec WCE" where id = 2740;
update projects set name = "Broad 2010-10-26 K562 CTCF" where id = 2741;
update projects set name = "Broad 2010-10-26 K562 H3K27ac" where id = 2742;
update projects set name = "Broad 2010-10-26 K562 H3K36me3" where id = 2743;
update projects set name = "Broad 2010-10-26 K562 H3K4me1" where id = 2744;
update projects set name = "Broad 2010-10-26 K562 H3K4me2" where id = 2745;
update projects set name = "Broad 2010-10-26 K562 H3K9me1" where id = 2746;
update projects set name = "Broad 2010-10-26 K562 H4K20me1" where id = 2747;
update projects set name = "Broad 2010-10-26 K562 RNA-pol2" where id = 2748;
update projects set name = "Broad 2010-10-26 K562 WCE" where id = 2749;
update projects set name = "Broad 2010-10-26 NHEK CTCF" where id = 2750;
update projects set name = "Broad 2010-10-26 NHEK H3K27ac" where id = 2751;
update projects set name = "Broad 2010-10-26 NHEK H3K27me3" where id = 2752;
update projects set name = "Broad 2010-10-26 NHEK H3K36me3" where id = 2753;
update projects set name = "Broad 2010-10-26 NHEK H3K4me1" where id = 2754;
update projects set name = "Broad 2010-10-26 NHEK H3K4me2" where id = 2755;
update projects set name = "Broad 2010-10-26 NHEK H3K4me3" where id = 2756;
update projects set name = "Broad 2010-10-26 NHEK H3K9ac" where id = 2757;
update projects set name = "Broad 2010-10-26 NHEK H3K9me1" where id = 2758;
update projects set name = "Broad 2010-10-26 NHEK H4K20me1" where id = 2759;
update projects set name = "Broad 2010-10-26 NHEK RNA-pol2" where id = 2760;
update projects set name = "Broad 2010-10-26 NHEK WCE" where id = 2761;
update projects set name = "Broad 2010-10-26 NHLF H3K4me2" where id = 2762;

select id,name,status,user_id from projects where id >= 2723 and id <= 2762 order by id ;
+------+----------------------------------+--------+---------+
| id   | name                             | status | user_id |
+------+----------------------------------+--------+---------+
| 2723 | Broad 2010-10-26 GM12878 CTCF    | loaded |      34 | 
| 2724 | Broad 2010-10-26 GM12878 H3K4me3 | loaded |      34 | 
| 2725 | Broad 2010-10-26 HMEC H3K9ac     | loaded |      34 | 
| 2726 | Broad 2010-10-26 HMEC H4K20me1   | loaded |      34 | 
| 2727 | Broad 2010-10-26 HMEC WCE        | loaded |      34 | 
| 2728 | Broad 2010-10-26 HepG2 H3K27me3  | loaded |      34 | 
| 2729 | Broad 2010-10-26 Huvec CTCF      | loaded |      34 | 
| 2730 | Broad 2010-10-26 Huvec H3K27ac   | loaded |      34 | 
| 2731 | Broad 2010-10-26 Huvec H3K27me3  | loaded |      34 | 
| 2732 | Broad 2010-10-26 Huvec H3K36me3  | loaded |      34 | 
| 2733 | Broad 2010-10-26 Huvec H3K4me1   | loaded |      34 | 
| 2734 | Broad 2010-10-26 Huvec H3K4me2   | loaded |      34 | 
| 2735 | Broad 2010-10-26 Huvec H3K4me3   | loaded |      34 | 
| 2736 | Broad 2010-10-26 Huvec H3K9ac    | loaded |      34 | 
| 2737 | Broad 2010-10-26 Huvec H3K9me1   | loaded |      34 | 
| 2738 | Broad 2010-10-26 Huvec H4K20me1  | loaded |      34 | 
| 2739 | Broad 2010-10-26 Huvec RNA-pol2  | loaded |      34 | 
| 2740 | Broad 2010-10-26 Huvec WCE       | loaded |      34 | 
| 2741 | Broad 2010-10-26 K562 CTCF       | loaded |      34 | 
| 2742 | Broad 2010-10-26 K562 H3K27ac    | loaded |      34 | 
| 2743 | Broad 2010-10-26 K562 H3K36me3   | loaded |      34 | 
| 2744 | Broad 2010-10-26 K562 H3K4me1    | loaded |      34 | 
| 2745 | Broad 2010-10-26 K562 H3K4me2    | loaded |      34 | 
| 2746 | Broad 2010-10-26 K562 H3K9me1    | loaded |      34 | 
| 2747 | Broad 2010-10-26 K562 H4K20me1   | loaded |      34 | 
| 2748 | Broad 2010-10-26 K562 RNA-pol2   | loaded |      34 | 
| 2749 | Broad 2010-10-26 K562 WCE        | loaded |      34 | 
| 2750 | Broad 2010-10-26 NHEK CTCF       | loaded |      34 | 
| 2751 | Broad 2010-10-26 NHEK H3K27ac    | loaded |      34 | 
| 2752 | Broad 2010-10-26 NHEK H3K27me3   | loaded |      34 | 
| 2753 | Broad 2010-10-26 NHEK H3K36me3   | loaded |      34 | 
| 2754 | Broad 2010-10-26 NHEK H3K4me1    | loaded |      34 | 
| 2755 | Broad 2010-10-26 NHEK H3K4me2    | loaded |      34 | 
| 2756 | Broad 2010-10-26 NHEK H3K4me3    | loaded |      34 | 
| 2757 | Broad 2010-10-26 NHEK H3K9ac     | loaded |      34 | 
| 2758 | Broad 2010-10-26 NHEK H3K9me1    | loaded |      34 | 
| 2759 | Broad 2010-10-26 NHEK H4K20me1   | loaded |      34 | 
| 2760 | Broad 2010-10-26 NHEK RNA-pol2   | loaded |      34 | 
| 2761 | Broad 2010-10-26 NHEK WCE        | loaded |      34 | 
| 2762 | Broad 2010-10-26 NHLF H3K4me2    | loaded |      34 | 
+------+----------------------------------+--------+---------+
40 rows in set (0.00 sec)

# edit all mdb.txt dateSubmitted => dateResubmitted  remove dateUnrestricted. On alignments and signals
# This should allow simple mdbUpdte statements
mdbUpdate hg19 2723/out/mdb.txt
mdbUpdate hg19 2724/out/mdb.txt
mdbUpdate hg19 2725/out/mdb.txt
mdbUpdate hg19 2726/out/mdb.txt
mdbUpdate hg19 2727/out/mdb.txt
mdbUpdate hg19 2728/out/mdb.txt
mdbUpdate hg19 2729/out/mdb.txt
mdbUpdate hg19 2730/out/mdb.txt
mdbUpdate hg19 2731/out/mdb.txt
mdbUpdate hg19 2732/out/mdb.txt
mdbUpdate hg19 2733/out/mdb.txt
mdbUpdate hg19 2734/out/mdb.txt
mdbUpdate hg19 2735/out/mdb.txt
mdbUpdate hg19 2736/out/mdb.txt
mdbUpdate hg19 2737/out/mdb.txt
mdbUpdate hg19 2738/out/mdb.txt
mdbUpdate hg19 2739/out/mdb.txt
mdbUpdate hg19 2740/out/mdb.txt
mdbUpdate hg19 2741/out/mdb.txt
mdbUpdate hg19 2742/out/mdb.txt
mdbUpdate hg19 2743/out/mdb.txt
mdbUpdate hg19 2744/out/mdb.txt
mdbUpdate hg19 2745/out/mdb.txt
mdbUpdate hg19 2746/out/mdb.txt
mdbUpdate hg19 2747/out/mdb.txt
mdbUpdate hg19 2748/out/mdb.txt
mdbUpdate hg19 2749/out/mdb.txt
mdbUpdate hg19 2750/out/mdb.txt
mdbUpdate hg19 2751/out/mdb.txt
mdbUpdate hg19 2752/out/mdb.txt
mdbUpdate hg19 2753/out/mdb.txt
mdbUpdate hg19 2754/out/mdb.txt
mdbUpdate hg19 2755/out/mdb.txt
mdbUpdate hg19 2756/out/mdb.txt
mdbUpdate hg19 2757/out/mdb.txt
mdbUpdate hg19 2758/out/mdb.txt
mdbUpdate hg19 2759/out/mdb.txt
mdbUpdate hg19 2760/out/mdb.txt
mdbUpdate hg19 2761/out/mdb.txt
mdbUpdate hg19 2762/out/mdb.txt

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra
# verify changes
git ci; git push
cd {tdb}
make DBS=hg19
make alpha DBS=hg19

#update downloads index.html
cd {downloads19}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
# 928 files
grep fastq\.gz index.html | wl  # 257 = 178 + 79 (expected 81!)  ## Verified that all expected are there.  2 must have replaced existing ones
encodeDownloadsPage.pl -db=hg19 -checksum index.html &

# mark as displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2723 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2724 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2725 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2726 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2727 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2728 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2729 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2730 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2731 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2732 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2733 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2734 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2735 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2736 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2737 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2738 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2739 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2740 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2741 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2742 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2743 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2744 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2745 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2746 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2747 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2748 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2749 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2750 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2751 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2752 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2753 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2754 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2755 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2756 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2757 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2758 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2759 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2760 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2761 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2762 displayed


2010-11-02 Cricket noticed 15 missing fastq.
============================================
Run Brian's verifier from metaDb/alpha

metaCollect wgEncodeBroadHistone.ra wgEncodeBroadHistone.reqViews.txt wgEncodeBroadHistone.expVars.txt | grep -v Signal
didn't find view RawData for replicate 2 in {antibody = Pol2(b),cell = K562}
didn't find view RawData for replicate 2 in {antibody = H4K20me1,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H4K20me1,cell = HMEC}
didn't find view RawData for replicate 2 in {antibody = H3K9ac,cell = HMEC}
didn't find view RawData for replicate 2 in {antibody = H3K4me3,cell = GM12878}
didn't find view RawData for replicate 2 in {antibody = H3K4me2,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H3K4me1,cell = K562}
didn't find view RawData for replicate 1 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K36me3,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H3K27me3,cell = HepG2}
didn't find view RawData for replicate 2 in {antibody = H3K27ac,cell = K562}
didn't find view RawData for replicate 2 in {antibody = CTCF,cell = K562}
didn't find view RawData for replicate 1 in {antibody = CTCF,cell = GM12878}
didn't find view Alignments for replicate 1 in {antibody = Input,cell = NHLF}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = NHLF}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = NHEK}
aborting
didn't find view Alignments for replicate 1 in {antibody = Input,cell = HSMM}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = HSMM}
didn't find view Alignments for replicate 1 in {antibody = Input,cell = HepG2}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = HepG2}
didn't find view Alignments for replicate 1 in {antibody = Input,cell = H1-hESC}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = H1-hESC}
didn't find view Alignments for replicate 1 in {antibody = Input,cell = GM12878}
didn't find view Alignments for replicate 2 in {antibody = Input,cell = GM12878}
didn't find view RawData for replicate 1 in {antibody = Control,cell = NHLF}
didn't find view RawData for replicate 2 in {antibody = Control,cell = NHLF}
didn't find view RawData for replicate 2 in {antibody = Control,cell = NHEK}
didn't find view RawData for replicate 1 in {antibody = Control,cell = HSMM}
didn't find view RawData for replicate 2 in {antibody = Control,cell = HSMM}
didn't find view RawData for replicate 2 in {antibody = Control,cell = HMEC}
didn't find view RawData for replicate 1 in {antibody = Control,cell = HepG2}
didn't find view RawData for replicate 2 in {antibody = Control,cell = HepG2}
didn't find view RawData for replicate 1 in {antibody = Control,cell = H1-hESC}
didn't find view RawData for replicate 2 in {antibody = Control,cell = H1-hESC}
didn't find view RawData for replicate 1 in {antibody = Control,cell = GM12878}
didn't find view RawData for replicate 2 in {antibody = Control,cell = GM12878}

## Clean up mdb where antibody = "input" instead of "control"
select * from metaDb where obj like "wgEncodeBroadHistone%" and var = "Antibody" and val = "Input";
+--------------------------------------------------+----------+---------+-------+
| obj                                              | var      | varType | val   |
+--------------------------------------------------+----------+---------+-------+
| wgEncodeBroadHistoneGm12878ControlStdRawDataRep1 | antibody | txt     | Input | 
| wgEncodeBroadHistoneGm12878ControlStdRawDataRep2 | antibody | txt     | Input | 
| wgEncodeBroadHistoneH1hescControlStdRawDataRep1  | antibody | txt     | Input | 
| wgEncodeBroadHistoneH1hescControlStdRawDataRep2  | antibody | txt     | Input | 
| wgEncodeBroadHistoneHepg2ControlStdRawDataRep1   | antibody | txt     | Input | 
| wgEncodeBroadHistoneHepg2ControlStdRawDataRep2   | antibody | txt     | Input | 
| wgEncodeBroadHistoneHsmmControlStdRawDataRep1    | antibody | txt     | Input | 
| wgEncodeBroadHistoneHsmmControlStdRawDataRep2    | antibody | txt     | Input | 
| wgEncodeBroadHistoneNhekControlStdRawDataRep2    | antibody | txt     | Input | 
| wgEncodeBroadHistoneNhlfControlStdRawDataRep1    | antibody | txt     | Input | 
| wgEncodeBroadHistoneNhlfControlStdRawDataRep2    | antibody | txt     | Input | 
+--------------------------------------------------+----------+---------+-------+
11 rows in set (0.00 sec)
update metaDb set val = "Control" where obj like "wgEncodeBroadHistone%" and var = "Antibody" and val = "Input";
Query OK, 11 rows affected (0.03 sec)
Rows matched: 11  Changed: 11  Warnings: 0

mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra

metaCollect wgEncodeBroadHistone.ra wgEncodeBroadHistone.reqViews.txt wgEncodeBroadHistone.expVars.txt | grep -v Signal
didn't find view RawData for replicate 2 in {antibody = Pol2(b),cell = K562}
didn't find view RawData for replicate 2 in {antibody = H4K20me1,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H4K20me1,cell = HMEC}
didn't find view RawData for replicate 2 in {antibody = H3K9ac,cell = HMEC}
didn't find view RawData for replicate 2 in {antibody = H3K4me3,cell = GM12878}
didn't find view RawData for replicate 2 in {antibody = H3K4me2,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H3K4me1,cell = K562}
didn't find view RawData for replicate 1 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K36me3,cell = K562}
didn't find view RawData for replicate 2 in {antibody = H3K27me3,cell = HepG2}
didn't find view RawData for replicate 2 in {antibody = H3K27ac,cell = K562}
didn't find view RawData for replicate 2 in {antibody = CTCF,cell = K562}
didn't find view RawData for replicate 1 in {antibody = CTCF,cell = GM12878}
didn't find view RawData for replicate 2 in {antibody = Control,cell = HMEC}

# These three are missing, new to hg19 and will be resubmitted by Broad
ll wgEncodeBroadHistoneNhaH3k36me3StdRawDataRep1.fastq.gz
ll wgEncodeBroadHistoneNhaH3k36me3StdRawDataRep2.fastq.gz
ll wgEncodeBroadHistoneHepg2H3k27me3StdRawDataRep2.fastq.gz

# These 12 need to be linked from hg18:
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562Pol2b.fastq.gz      wgEncodeBroadHistoneK562Pol2bStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H4k20me1.fastq.gz   wgEncodeBroadHistoneK562H4k20me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k4me2.fastq.gz    wgEncodeBroadHistoneK562H3k4me2StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k4me1.fastq.gz    wgEncodeBroadHistoneK562H3k4me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k36me3.fastq.gz   wgEncodeBroadHistoneK562H3k36me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562H3k27ac.fastq.gz    wgEncodeBroadHistoneK562H3k27acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2K562Ctcf.fastq.gz       wgEncodeBroadHistoneK562CtcfStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH4k20me1.fastq.gz   wgEncodeBroadHistoneHmecH4k20me1StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecH3k9ac.fastq.gz     wgEncodeBroadHistoneHmecH3k9acStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2HmecControl.fastq.gz    wgEncodeBroadHistoneHmecControlStdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me3.fastq.gz wgEncodeBroadHistoneGm12878H3k4me3StdRawDataRep2.fastq.gz
ln ../../hg18/wgEncodeBroadChipSeq/wgEncodeBroadChipSeqRawDataRep1Gm12878Ctcf.fastq.gz    wgEncodeBroadHistoneGm12878CtcfStdRawDataRep1.fastq.gz

rm importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562Pol2b      >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H4k20me1   >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k4me2    >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k4me1    >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k36me3   >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562H3k27ac    >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2K562Ctcf       >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH4k20me1   >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecH3k9ac     >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2HmecControl    >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep2Gm12878H3k4me3 >> importMoreBroadhg18Tohg19.ra
mdbPrint hg18 -obj=wgEncodeBroadChipSeqRawDataRep1Gm12878Ctcf    >> importMoreBroadhg18Tohg19.ra
## EDIT for objName, composite, fileName, origAssembly and remove parentName
mdbUpdate hg19 importMoreBroadhg18Tohg19.ra
 Using table named 'hg19.metaDb_tdreszer'.
Read 12 metadata objects from hg19
Affected 216 row(s) in hg19.metaDb_tdreszer

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra
# verify changes
git ci; git push
cd {tdb}
make DBS=hg19
make alpha DBS=hg19

#update downloads index.html
cd {downloads19}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
grep fastq\.gz index.html | wl  # 178: 64 + 114 as EXPECTED Total 849 files!
# Don't bother with -checksum until resubmissions are added.

metaCollect wgEncodeBroadHistone.ra wgEncodeBroadHistone.reqViews.txt wgEncodeBroadHistone.expVars.txt | grep -v Signal
didn't find view RawData for replicate 1 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K36me3,cell = NH-A}
didn't find view RawData for replicate 2 in {antibody = H3K27me3,cell = HepG2}

### At this point Noam informs me that the 3 missing will be submitted and that ALL BAMS and bogWigs will need to be resubmitted again!

2010-11-05 Reloading so much more!!!
========================
select id,name,status,user_id from projects where name like "BI_%" order by id;
+------+--------------------------+--------------------+---------+
| id   | name                     | status             | user_id |
+------+--------------------------+--------------------+---------+
| 2796 | BI H1 H3K4me1            | loaded             |      34 | 
| 2800 | BI_GM12878_CTCF          | validate failed    |      34 | 
| 2801 | BI_GM12878_H3K27ac       | validate failed    |      34 | 
| 2802 | BI_GM12878_H3K27me3      | validate failed    |      34 | 
| 2803 | BI_GM12878_H3K36me3      | validate failed    |      34 | 
| 2804 | BI_GM12878_H3K4me1       | validate failed    |      34 | 
| 2805 | BI_GM12878_H3K4me2       | validate failed    |      34 | 
| 2806 | BI_GM12878_H3K4me3       | validate failed    |      34 | 
| 2807 | BI_GM12878_H3K9ac        | validate failed    |      34 | 
| 2808 | BI_GM12878_H4K20me1      | validate failed    |      34 | 
| 2809 | BI_GM12878_WCE           | validate failed    |      34 | 
| 2810 | BI_H1_CTCF               | validate failed    |      34 | 
| 2811 | BI_H1_H3K27ac            | validate failed    |      34 | 
| 2812 | BI_H1_H3K27me3           | validate failed    |      34 | 
| 2813 | BI_H1_H3K36me3           | validate failed    |      34 | 
| 2814 | BI_H1_H3K4me2            | validate failed    |      34 | 
| 2815 | BI_H1_H3K4me3            | validate failed    |      34 | 
| 2816 | BI_H1_H3K9ac             | validate failed    |      34 | 
| 2817 | BI_H1_H4K20me1           | validate failed    |      34 | 
| 2818 | BI_H1_WCE                | validate failed    |      34 | 
| 2819 | BI_HMEC_CTCF             | validate failed    |      34 | 
| 2820 | BI_HMEC_H3K27ac          | validate failed    |      34 | 
| 2821 | BI_HMEC_H3K27me3         | validate failed    |      34 | 
| 2822 | BI_HMEC_H3K36me3         | validate failed    |      34 | 
| 2823 | BI_HMEC_H3K4me1          | validate failed    |      34 | 
| 2824 | BI_HMEC_H3K4me2          | validate failed    |      34 | 
| 2825 | BI_HMEC_H3K4me3          | validate failed    |      34 | 
| 2826 | BI_HMEC_H3K9ac           | validate failed    |      34 | 
| 2827 | BI_HMEC_H4K20me1         | validate failed    |      34 | 
| 2828 | BI_HMEC_WCE              | validate failed    |      34 | 
| 2829 | BI_HSMM-myotube_CTCF     | validate failed    |      34 | 
| 2830 | BI_HSMM-myotube_H2A.Z    | validate failed    |      34 | 
| 2831 | BI_HSMM-myotube_H3K27ac  | validate failed    |      34 | 
| 2832 | BI_HSMM-myotube_H3K36me3 | validate failed    |      34 | 
| 2833 | BI_HSMM-myotube_H3K4me1  | validate failed    |      34 | 
| 2834 | BI_HSMM-myotube_H3K4me2  | validate failed    |      34 | 
| 2835 | BI_HSMM-myotube_H3K4me3  | validate failed    |      34 | 
| 2836 | BI_HSMM-myotube_H3K79me2 | validate failed    |      34 | 
| 2837 | BI_HSMM-myotube_H3K9ac   | validate failed    |      34 | 
| 2838 | BI_HSMM-myotube_H4K20me1 | validate failed    |      34 | 
| 2839 | BI_HSMM-myotube_WCE      | validating         |      34 | 
| 2840 | BI_HSMM_CTCF             | validate failed    |      34 | 
| 2841 | BI_HSMM_H3K27ac          | validate failed    |      34 | 
| 2842 | BI_HSMM_H3K27me3         | validate failed    |      34 | 
| 2843 | BI_HSMM_H3K36me3         | validate failed    |      34 | 
| 2844 | BI_HSMM_H3K4me1          | validate failed    |      34 | 
| 2845 | BI_HSMM_H3K4me2          | validate failed    |      34 | 
| 2846 | BI_HSMM_H3K4me3          | validate failed    |      34 | 
| 2847 | BI_HSMM_H3K79me2         | validate failed    |      34 | 
| 2848 | BI_HSMM_H3K9ac           | validate failed    |      34 | 
| 2849 | BI_HSMM_H3K9me3          | validate failed    |      34 | 
| 2850 | BI_HSMM_H4K20me1         | validate failed    |      34 | 
| 2851 | BI_HSMM_WCE              | validate failed    |      34 | 
| 2852 | BI_HeLaS3_CTCF           | validate failed    |      34 | 
| 2853 | BI_HeLaS3_H3K27ac        | validate failed    |      34 | 
| 2854 | BI_HeLaS3_H3K36me3       | validating         |      34 | 
| 2855 | BI_HeLaS3_H3K4me2        | validating         |      34 | 
| 2856 | BI_HeLaS3_H3K4me3        | validate failed    |      34 | 
| 2857 | BI_HeLaS3_H3K79me2       | validate failed    |      34 | 
| 2858 | BI_HeLaS3_H3K9ac         | validate failed    |      34 | 
| 2859 | BI_HeLaS3_H4K20me1       | validate failed    |      34 | 
| 2860 | BI_HeLaS3_RNA-pol2       | validating         |      34 | 
| 2861 | BI_HeLaS3_WCE            | validate requested |      34 | 
| 2862 | BI_HepG2_CTCF            | validate failed    |      34 | 
| 2863 | BI_HepG2_H2A.Z           | validate failed    |      34 | 
| 2864 | BI_HepG2_H3K27ac         | validate failed    |      34 | 
| 2865 | BI_HepG2_H3K27me3        | validate requested |      34 | 
| 2866 | BI_HepG2_H3K36me3        | validate failed    |      34 | 
| 2867 | BI_HepG2_H3K4me2         | validate failed    |      34 | 
| 2868 | BI_HepG2_H3K4me3         | validate failed    |      34 | 
| 2869 | BI_HepG2_H3K79me2        | validate failed    |      34 | 
| 2870 | BI_HepG2_H3K9ac          | validate failed    |      34 | 
| 2871 | BI_HepG2_H4K20me1        | validate failed    |      34 | 
| 2872 | BI_HepG2_WCE             | validate failed    |      34 | 
| 2873 | BI_Huvec_CTCF            | validate failed    |      34 | 
| 2874 | BI_Huvec_H3K27ac         | validate failed    |      34 | 
| 2875 | BI_Huvec_H3K27me3        | validate failed    |      34 | 
| 2876 | BI_Huvec_H3K4me1         | validate failed    |      34 | 
| 2877 | BI_Huvec_H3K4me2         | validate failed    |      34 | 
| 2878 | BI_Huvec_H3K4me3         | validate failed    |      34 | 
| 2879 | BI_Huvec_H3K9ac          | validate failed    |      34 | 
| 2880 | BI_Huvec_H3K9me1         | validate failed    |      34 | 
| 2881 | BI_Huvec_H4K20me1        | validate failed    |      34 | 
| 2882 | BI_Huvec_RNA-pol2        | validate failed    |      34 | 
| 2883 | BI_Huvec_WCE             | validate failed    |      34 | 
| 2884 | BI_K562_CTCF             | validate failed    |      34 | 
| 2885 | BI_K562_H3K27ac          | validate failed    |      34 | 
| 2886 | BI_K562_H3K27me3         | validate failed    |      34 | 
| 2887 | BI_K562_H3K36me3         | validate failed    |      34 | 
| 2888 | BI_K562_H3K4me1          | validate failed    |      34 | 
| 2889 | BI_K562_H3K4me2          | validate failed    |      34 | 
| 2890 | BI_K562_H3K4me3          | validate failed    |      34 | 
| 2891 | BI_K562_H3K9ac           | validate failed    |      34 | 
| 2892 | BI_K562_H3K9me1          | validate failed    |      34 | 
| 2893 | BI_K562_H4K20me1         | validate failed    |      34 | 
| 2894 | BI_K562_RNA-pol2         | validate failed    |      34 | 
| 2895 | BI_K562_WCE              | validate failed    |      34 | 
| 2896 | BI_NH-A_CTCF             | validate failed    |      34 | 
| 2897 | BI_NH-A_H3K27ac          | validate failed    |      34 | 
| 2898 | BI_NH-A_H3K27me3         | validate failed    |      34 | 
| 2899 | BI_NH-A_H3K36me3         | validate requested |      34 | 
| 2900 | BI_NH-A_H3K4me1          | validate failed    |      34 | 
| 2901 | BI_NH-A_H3K4me3          | validate failed    |      34 | 
| 2902 | BI_NH-A_WCE              | validate requested |      34 | 
| 2903 | BI_NHEK_CTCF             | validate requested |      34 | 
| 2904 | BI_NHEK_H3K27ac          | validate requested |      34 | 
| 2905 | BI_NHEK_H3K27me3         | validate requested |      34 | 
| 2906 | BI_NHEK_H3K36me3         | validate requested |      34 | 
| 2907 | BI_NHEK_H3K4me1          | validate requested |      34 | 
| 2908 | BI_NHEK_H3K4me2          | validate requested |      34 | 
| 2909 | BI_NHEK_H3K4me3          | validate requested |      34 | 
| 2910 | BI_NHEK_H3K9ac           | validate requested |      34 | 
| 2911 | BI_NHEK_H3K9me1          | validate requested |      34 | 
| 2912 | BI_NHEK_H4K20me1         | validate requested |      34 | 
| 2913 | BI_NHEK_RNA-pol2         | validate requested |      34 | 
| 2914 | BI_NHEK_WCE              | validate requested |      34 | 
| 2915 | BI_NHLF_CTCF             | validate requested |      34 | 
| 2916 | BI_NHLF_H3K27ac          | validate requested |      34 | 
| 2917 | BI_NHLF_H3K27me3         | validate requested |      34 | 
| 2918 | BI_NHLF_H3K36me3         | validate requested |      34 | 
| 2919 | BI_NHLF_H3K4me1          | validate requested |      34 | 
| 2920 | BI_NHLF_H3K4me2          | validate requested |      34 | 
| 2921 | BI_NHLF_H3K4me3          | validate requested |      34 | 
| 2922 | BI_NHLF_H3K9ac           | validate requested |      34 | 
| 2923 | BI_NHLF_H4K20me1         | validate requested |      34 | 
| 2924 | BI_NHLF_WCE              | validate requested |      34 | 
+------+--------------------------+--------------------+---------+
126 rows in set (0.00 sec)

cp 2796/broadHistone.daf 2800/broadHistoneReload.daf  
cp 2796/broadHistone.daf 2801/broadHistoneReload.daf
cp 2796/broadHistone.daf 2802/broadHistoneReload.daf
cp 2796/broadHistone.daf 2803/broadHistoneReload.daf
cp 2796/broadHistone.daf 2804/broadHistoneReload.daf
cp 2796/broadHistone.daf 2805/broadHistoneReload.daf
cp 2796/broadHistone.daf 2806/broadHistoneReload.daf
cp 2796/broadHistone.daf 2807/broadHistoneReload.daf
cp 2796/broadHistone.daf 2808/broadHistoneReload.daf
cp 2796/broadHistone.daf 2809/broadHistoneReload.daf
cp 2796/broadHistone.daf 2810/broadHistoneReload.daf
cp 2796/broadHistone.daf 2811/broadHistoneReload.daf
cp 2796/broadHistone.daf 2812/broadHistoneReload.daf
cp 2796/broadHistone.daf 2813/broadHistoneReload.daf
cp 2796/broadHistone.daf 2814/broadHistoneReload.daf
cp 2796/broadHistone.daf 2815/broadHistoneReload.daf
cp 2796/broadHistone.daf 2816/broadHistoneReload.daf
cp 2796/broadHistone.daf 2817/broadHistoneReload.daf
cp 2796/broadHistone.daf 2818/broadHistoneReload.daf
cp 2796/broadHistone.daf 2819/broadHistoneReload.daf
cp 2796/broadHistone.daf 2820/broadHistoneReload.daf
cp 2796/broadHistone.daf 2821/broadHistoneReload.daf
cp 2796/broadHistone.daf 2822/broadHistoneReload.daf
cp 2796/broadHistone.daf 2823/broadHistoneReload.daf
cp 2796/broadHistone.daf 2824/broadHistoneReload.daf
cp 2796/broadHistone.daf 2825/broadHistoneReload.daf
cp 2796/broadHistone.daf 2826/broadHistoneReload.daf
cp 2796/broadHistone.daf 2827/broadHistoneReload.daf
cp 2796/broadHistone.daf 2828/broadHistoneReload.daf
cp 2796/broadHistone.daf 2829/broadHistoneReload.daf
cp 2796/broadHistone.daf 2830/broadHistoneReload.daf
cp 2796/broadHistone.daf 2831/broadHistoneReload.daf
cp 2796/broadHistone.daf 2832/broadHistoneReload.daf
cp 2796/broadHistone.daf 2833/broadHistoneReload.daf
cp 2796/broadHistone.daf 2834/broadHistoneReload.daf
cp 2796/broadHistone.daf 2835/broadHistoneReload.daf
cp 2796/broadHistone.daf 2836/broadHistoneReload.daf
cp 2796/broadHistone.daf 2837/broadHistoneReload.daf
cp 2796/broadHistone.daf 2838/broadHistoneReload.daf
cp 2796/broadHistone.daf 2839/broadHistoneReload.daf
cp 2796/broadHistone.daf 2840/broadHistoneReload.daf
cp 2796/broadHistone.daf 2841/broadHistoneReload.daf
cp 2796/broadHistone.daf 2842/broadHistoneReload.daf
cp 2796/broadHistone.daf 2843/broadHistoneReload.daf
cp 2796/broadHistone.daf 2844/broadHistoneReload.daf
cp 2796/broadHistone.daf 2845/broadHistoneReload.daf
cp 2796/broadHistone.daf 2846/broadHistoneReload.daf
cp 2796/broadHistone.daf 2847/broadHistoneReload.daf
cp 2796/broadHistone.daf 2848/broadHistoneReload.daf
cp 2796/broadHistone.daf 2849/broadHistoneReload.daf
cp 2796/broadHistone.daf 2850/broadHistoneReload.daf
cp 2796/broadHistone.daf 2851/broadHistoneReload.daf
cp 2796/broadHistone.daf 2852/broadHistoneReload.daf
cp 2796/broadHistone.daf 2853/broadHistoneReload.daf
cp 2796/broadHistone.daf 2854/broadHistoneReload.daf
cp 2796/broadHistone.daf 2855/broadHistoneReload.daf
cp 2796/broadHistone.daf 2856/broadHistoneReload.daf
cp 2796/broadHistone.daf 2857/broadHistoneReload.daf
cp 2796/broadHistone.daf 2858/broadHistoneReload.daf
cp 2796/broadHistone.daf 2859/broadHistoneReload.daf
cp 2796/broadHistone.daf 2860/broadHistoneReload.daf
cp 2796/broadHistone.daf 2861/broadHistoneReload.daf
cp 2796/broadHistone.daf 2862/broadHistoneReload.daf
cp 2796/broadHistone.daf 2863/broadHistoneReload.daf
cp 2796/broadHistone.daf 2864/broadHistoneReload.daf
cp 2796/broadHistone.daf 2865/broadHistoneReload.daf
cp 2796/broadHistone.daf 2866/broadHistoneReload.daf
cp 2796/broadHistone.daf 2867/broadHistoneReload.daf
cp 2796/broadHistone.daf 2868/broadHistoneReload.daf
cp 2796/broadHistone.daf 2869/broadHistoneReload.daf
cp 2796/broadHistone.daf 2870/broadHistoneReload.daf
cp 2796/broadHistone.daf 2871/broadHistoneReload.daf
cp 2796/broadHistone.daf 2872/broadHistoneReload.daf
cp 2796/broadHistone.daf 2873/broadHistoneReload.daf
cp 2796/broadHistone.daf 2874/broadHistoneReload.daf
cp 2796/broadHistone.daf 2875/broadHistoneReload.daf
cp 2796/broadHistone.daf 2876/broadHistoneReload.daf
cp 2796/broadHistone.daf 2877/broadHistoneReload.daf
cp 2796/broadHistone.daf 2878/broadHistoneReload.daf
cp 2796/broadHistone.daf 2879/broadHistoneReload.daf
cp 2796/broadHistone.daf 2880/broadHistoneReload.daf
cp 2796/broadHistone.daf 2881/broadHistoneReload.daf
cp 2796/broadHistone.daf 2882/broadHistoneReload.daf
cp 2796/broadHistone.daf 2883/broadHistoneReload.daf
cp 2796/broadHistone.daf 2884/broadHistoneReload.daf
cp 2796/broadHistone.daf 2885/broadHistoneReload.daf
cp 2796/broadHistone.daf 2886/broadHistoneReload.daf
cp 2796/broadHistone.daf 2887/broadHistoneReload.daf
cp 2796/broadHistone.daf 2888/broadHistoneReload.daf
cp 2796/broadHistone.daf 2889/broadHistoneReload.daf
cp 2796/broadHistone.daf 2890/broadHistoneReload.daf
cp 2796/broadHistone.daf 2891/broadHistoneReload.daf
cp 2796/broadHistone.daf 2892/broadHistoneReload.daf
cp 2796/broadHistone.daf 2893/broadHistoneReload.daf
cp 2796/broadHistone.daf 2894/broadHistoneReload.daf
cp 2796/broadHistone.daf 2895/broadHistoneReload.daf
cp 2796/broadHistone.daf 2896/broadHistoneReload.daf
cp 2796/broadHistone.daf 2897/broadHistoneReload.daf
cp 2796/broadHistone.daf 2898/broadHistoneReload.daf
cp 2796/broadHistone.daf 2899/broadHistoneReload.daf
cp 2796/broadHistone.daf 2900/broadHistoneReload.daf
cp 2796/broadHistone.daf 2901/broadHistoneReload.daf
cp 2796/broadHistone.daf 2902/broadHistoneReload.daf
cp 2796/broadHistone.daf 2903/broadHistoneReload.daf
cp 2796/broadHistone.daf 2904/broadHistoneReload.daf
cp 2796/broadHistone.daf 2905/broadHistoneReload.daf
cp 2796/broadHistone.daf 2906/broadHistoneReload.daf
cp 2796/broadHistone.daf 2907/broadHistoneReload.daf
cp 2796/broadHistone.daf 2908/broadHistoneReload.daf
cp 2796/broadHistone.daf 2909/broadHistoneReload.daf
cp 2796/broadHistone.daf 2910/broadHistoneReload.daf
cp 2796/broadHistone.daf 2911/broadHistoneReload.daf
cp 2796/broadHistone.daf 2912/broadHistoneReload.daf
cp 2796/broadHistone.daf 2913/broadHistoneReload.daf
cp 2796/broadHistone.daf 2914/broadHistoneReload.daf
cp 2796/broadHistone.daf 2915/broadHistoneReload.daf
cp 2796/broadHistone.daf 2916/broadHistoneReload.daf
cp 2796/broadHistone.daf 2917/broadHistoneReload.daf
cp 2796/broadHistone.daf 2918/broadHistoneReload.daf
cp 2796/broadHistone.daf 2919/broadHistoneReload.daf
cp 2796/broadHistone.daf 2920/broadHistoneReload.daf
cp 2796/broadHistone.daf 2921/broadHistoneReload.daf
cp 2796/broadHistone.daf 2922/broadHistoneReload.daf
cp 2796/broadHistone.daf 2923/broadHistoneReload.daf
cp 2796/broadHistone.daf 2924/broadHistoneReload.daf

# UPDATE MDB
# Save dateSubmitted and dateUnrestricted into update commands to add after the fact
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeBroadHistone" -updDb=hg19 -updMdb=metaDb_tdreszer -updSelect=obj -updVars=dateSubmitted,dateUnrestricted > broadResub.txt
e broadResub.txt
# looks good.
# load all submission dir mdb.txt
rm mdbBroad.ra
cat 2796/out/mdb.txt >> mdbBroad.ra
cat 2800/out/mdb.txt >> mdbBroad.ra
cat 2801/out/mdb.txt >> mdbBroad.ra
cat 2802/out/mdb.txt >> mdbBroad.ra
cat 2803/out/mdb.txt >> mdbBroad.ra
cat 2804/out/mdb.txt >> mdbBroad.ra
cat 2805/out/mdb.txt >> mdbBroad.ra
cat 2806/out/mdb.txt >> mdbBroad.ra
cat 2807/out/mdb.txt >> mdbBroad.ra
cat 2808/out/mdb.txt >> mdbBroad.ra
cat 2809/out/mdb.txt >> mdbBroad.ra
cat 2810/out/mdb.txt >> mdbBroad.ra
cat 2811/out/mdb.txt >> mdbBroad.ra
cat 2812/out/mdb.txt >> mdbBroad.ra
cat 2813/out/mdb.txt >> mdbBroad.ra
cat 2814/out/mdb.txt >> mdbBroad.ra
cat 2815/out/mdb.txt >> mdbBroad.ra
cat 2816/out/mdb.txt >> mdbBroad.ra
cat 2817/out/mdb.txt >> mdbBroad.ra
cat 2818/out/mdb.txt >> mdbBroad.ra
cat 2819/out/mdb.txt >> mdbBroad.ra
cat 2820/out/mdb.txt >> mdbBroad.ra
cat 2821/out/mdb.txt >> mdbBroad.ra
cat 2822/out/mdb.txt >> mdbBroad.ra
cat 2823/out/mdb.txt >> mdbBroad.ra
cat 2824/out/mdb.txt >> mdbBroad.ra
cat 2825/out/mdb.txt >> mdbBroad.ra
cat 2826/out/mdb.txt >> mdbBroad.ra
cat 2827/out/mdb.txt >> mdbBroad.ra
cat 2828/out/mdb.txt >> mdbBroad.ra
cat 2829/out/mdb.txt >> mdbBroad.ra
cat 2830/out/mdb.txt >> mdbBroad.ra
cat 2831/out/mdb.txt >> mdbBroad.ra
cat 2832/out/mdb.txt >> mdbBroad.ra
cat 2833/out/mdb.txt >> mdbBroad.ra
cat 2834/out/mdb.txt >> mdbBroad.ra
cat 2835/out/mdb.txt >> mdbBroad.ra
cat 2836/out/mdb.txt >> mdbBroad.ra
cat 2837/out/mdb.txt >> mdbBroad.ra
cat 2838/out/mdb.txt >> mdbBroad.ra
cat 2839/out/mdb.txt >> mdbBroad.ra
cat 2840/out/mdb.txt >> mdbBroad.ra
cat 2841/out/mdb.txt >> mdbBroad.ra
cat 2842/out/mdb.txt >> mdbBroad.ra
cat 2843/out/mdb.txt >> mdbBroad.ra
cat 2844/out/mdb.txt >> mdbBroad.ra
cat 2845/out/mdb.txt >> mdbBroad.ra
cat 2846/out/mdb.txt >> mdbBroad.ra
cat 2847/out/mdb.txt >> mdbBroad.ra
cat 2848/out/mdb.txt >> mdbBroad.ra
cat 2849/out/mdb.txt >> mdbBroad.ra
cat 2850/out/mdb.txt >> mdbBroad.ra
cat 2851/out/mdb.txt >> mdbBroad.ra
cat 2852/out/mdb.txt >> mdbBroad.ra
cat 2853/out/mdb.txt >> mdbBroad.ra
cat 2854/out/mdb.txt >> mdbBroad.ra
cat 2855/out/mdb.txt >> mdbBroad.ra
cat 2856/out/mdb.txt >> mdbBroad.ra
cat 2857/out/mdb.txt >> mdbBroad.ra
cat 2858/out/mdb.txt >> mdbBroad.ra
cat 2859/out/mdb.txt >> mdbBroad.ra
cat 2860/out/mdb.txt >> mdbBroad.ra
e mdbBroad.ra # add dateResubmitted to all
mv mdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/

# Test broadResub.txt
# remove -test flag
chmod 755 broadResub.txt
./broadResub.txt
Affected 2 row(s) in hg19.metaDb_tdreszer
Affected 0 row(s) in hg19.metaDb_tdreszer

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra
gold wgEncodeBroadHistone.ra
# verify changes
git ci; git push
cd {tdb}
make DBS=hg19
make alpha DBS=hg19

#update downloads index.html
cd {downloads19}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html
# 1056 files
encodeDownloadsPage.pl -db=hg19 -checksum index.html &

### need to add peaks
rm tdbBroad.ra
cat 2796/out/trackDb.ra >> tdbBroad.ra
cat 2800/out/trackDb.ra >> tdbBroad.ra
cat 2801/out/trackDb.ra >> tdbBroad.ra
cat 2802/out/trackDb.ra >> tdbBroad.ra
cat 2803/out/trackDb.ra >> tdbBroad.ra
cat 2804/out/trackDb.ra >> tdbBroad.ra
cat 2805/out/trackDb.ra >> tdbBroad.ra
cat 2806/out/trackDb.ra >> tdbBroad.ra
cat 2807/out/trackDb.ra >> tdbBroad.ra
cat 2808/out/trackDb.ra >> tdbBroad.ra
cat 2809/out/trackDb.ra >> tdbBroad.ra
cat 2810/out/trackDb.ra >> tdbBroad.ra
cat 2811/out/trackDb.ra >> tdbBroad.ra
cat 2812/out/trackDb.ra >> tdbBroad.ra
cat 2813/out/trackDb.ra >> tdbBroad.ra
cat 2814/out/trackDb.ra >> tdbBroad.ra
cat 2815/out/trackDb.ra >> tdbBroad.ra
cat 2816/out/trackDb.ra >> tdbBroad.ra
cat 2817/out/trackDb.ra >> tdbBroad.ra
cat 2818/out/trackDb.ra >> tdbBroad.ra
cat 2819/out/trackDb.ra >> tdbBroad.ra
cat 2820/out/trackDb.ra >> tdbBroad.ra
cat 2821/out/trackDb.ra >> tdbBroad.ra
cat 2822/out/trackDb.ra >> tdbBroad.ra
cat 2823/out/trackDb.ra >> tdbBroad.ra
cat 2824/out/trackDb.ra >> tdbBroad.ra
cat 2825/out/trackDb.ra >> tdbBroad.ra
cat 2826/out/trackDb.ra >> tdbBroad.ra
cat 2827/out/trackDb.ra >> tdbBroad.ra
cat 2828/out/trackDb.ra >> tdbBroad.ra
cat 2829/out/trackDb.ra >> tdbBroad.ra
cat 2830/out/trackDb.ra >> tdbBroad.ra
cat 2831/out/trackDb.ra >> tdbBroad.ra
cat 2832/out/trackDb.ra >> tdbBroad.ra
cat 2833/out/trackDb.ra >> tdbBroad.ra
cat 2834/out/trackDb.ra >> tdbBroad.ra
cat 2835/out/trackDb.ra >> tdbBroad.ra
cat 2836/out/trackDb.ra >> tdbBroad.ra
cat 2837/out/trackDb.ra >> tdbBroad.ra
cat 2838/out/trackDb.ra >> tdbBroad.ra
cat 2839/out/trackDb.ra >> tdbBroad.ra
cat 2840/out/trackDb.ra >> tdbBroad.ra
cat 2841/out/trackDb.ra >> tdbBroad.ra
cat 2842/out/trackDb.ra >> tdbBroad.ra
cat 2843/out/trackDb.ra >> tdbBroad.ra
cat 2844/out/trackDb.ra >> tdbBroad.ra
cat 2845/out/trackDb.ra >> tdbBroad.ra
cat 2846/out/trackDb.ra >> tdbBroad.ra
cat 2847/out/trackDb.ra >> tdbBroad.ra
cat 2848/out/trackDb.ra >> tdbBroad.ra
cat 2849/out/trackDb.ra >> tdbBroad.ra
cat 2850/out/trackDb.ra >> tdbBroad.ra
cat 2851/out/trackDb.ra >> tdbBroad.ra
cat 2852/out/trackDb.ra >> tdbBroad.ra
cat 2853/out/trackDb.ra >> tdbBroad.ra
cat 2854/out/trackDb.ra >> tdbBroad.ra
cat 2855/out/trackDb.ra >> tdbBroad.ra
cat 2856/out/trackDb.ra >> tdbBroad.ra
cat 2857/out/trackDb.ra >> tdbBroad.ra
cat 2858/out/trackDb.ra >> tdbBroad.ra
cat 2859/out/trackDb.ra >> tdbBroad.ra
cat 2860/out/trackDb.ra >> tdbBroad.ra
cat 2861/out/trackDb.ra >> tdbBroad.ra
cat 2862/out/trackDb.ra >> tdbBroad.ra
cat 2863/out/trackDb.ra >> tdbBroad.ra
cat 2864/out/trackDb.ra >> tdbBroad.ra
cat 2865/out/trackDb.ra >> tdbBroad.ra
cat 2866/out/trackDb.ra >> tdbBroad.ra
cat 2867/out/trackDb.ra >> tdbBroad.ra
cat 2868/out/trackDb.ra >> tdbBroad.ra
cat 2869/out/trackDb.ra >> tdbBroad.ra
cat 2870/out/trackDb.ra >> tdbBroad.ra
cat 2871/out/trackDb.ra >> tdbBroad.ra
cat 2872/out/trackDb.ra >> tdbBroad.ra
cat 2873/out/trackDb.ra >> tdbBroad.ra
cat 2874/out/trackDb.ra >> tdbBroad.ra
cat 2875/out/trackDb.ra >> tdbBroad.ra
cat 2876/out/trackDb.ra >> tdbBroad.ra
cat 2877/out/trackDb.ra >> tdbBroad.ra
cat 2878/out/trackDb.ra >> tdbBroad.ra
cat 2879/out/trackDb.ra >> tdbBroad.ra
cat 2880/out/trackDb.ra >> tdbBroad.ra
cat 2881/out/trackDb.ra >> tdbBroad.ra
cat 2882/out/trackDb.ra >> tdbBroad.ra
cat 2883/out/trackDb.ra >> tdbBroad.ra
cat 2884/out/trackDb.ra >> tdbBroad.ra
cat 2885/out/trackDb.ra >> tdbBroad.ra
cat 2886/out/trackDb.ra >> tdbBroad.ra
cat 2887/out/trackDb.ra >> tdbBroad.ra
cat 2888/out/trackDb.ra >> tdbBroad.ra
cat 2889/out/trackDb.ra >> tdbBroad.ra
cat 2890/out/trackDb.ra >> tdbBroad.ra
cat 2891/out/trackDb.ra >> tdbBroad.ra
cat 2892/out/trackDb.ra >> tdbBroad.ra
cat 2893/out/trackDb.ra >> tdbBroad.ra
cat 2894/out/trackDb.ra >> tdbBroad.ra
cat 2895/out/trackDb.ra >> tdbBroad.ra
cat 2896/out/trackDb.ra >> tdbBroad.ra
cat 2897/out/trackDb.ra >> tdbBroad.ra
cat 2898/out/trackDb.ra >> tdbBroad.ra
cat 2899/out/trackDb.ra >> tdbBroad.ra
cat 2900/out/trackDb.ra >> tdbBroad.ra
cat 2901/out/trackDb.ra >> tdbBroad.ra
cat 2902/out/trackDb.ra >> tdbBroad.ra
cat 2903/out/trackDb.ra >> tdbBroad.ra
cat 2904/out/trackDb.ra >> tdbBroad.ra
cat 2905/out/trackDb.ra >> tdbBroad.ra
cat 2906/out/trackDb.ra >> tdbBroad.ra
cat 2907/out/trackDb.ra >> tdbBroad.ra
cat 2908/out/trackDb.ra >> tdbBroad.ra
cat 2909/out/trackDb.ra >> tdbBroad.ra
cat 2910/out/trackDb.ra >> tdbBroad.ra
cat 2911/out/trackDb.ra >> tdbBroad.ra
cat 2912/out/trackDb.ra >> tdbBroad.ra
cat 2913/out/trackDb.ra >> tdbBroad.ra
cat 2914/out/trackDb.ra >> tdbBroad.ra
cat 2915/out/trackDb.ra >> tdbBroad.ra
cat 2916/out/trackDb.ra >> tdbBroad.ra
cat 2917/out/trackDb.ra >> tdbBroad.ra
cat 2918/out/trackDb.ra >> tdbBroad.ra
cat 2919/out/trackDb.ra >> tdbBroad.ra
cat 2920/out/trackDb.ra >> tdbBroad.ra
cat 2921/out/trackDb.ra >> tdbBroad.ra
cat 2922/out/trackDb.ra >> tdbBroad.ra
cat 2923/out/trackDb.ra >> tdbBroad.ra
cat 2924/out/trackDb.ra >> tdbBroad.ra
raToLines tdbBroad.ra tdbBroad.lines
wl tdbBroad.lines 
240 tdbBroad.lines
encpipeline_prod> grep Peak tdbBroad.lines | wl
114
grep Peak tdbBroad.lines > tdbBroad.lines2
linesToRa tdbBroad.lines2 tdbBroad.ra
mv tdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19
e tdbBroad.ra # Change tags where needed (e.g. H1hESC => H1)
encodePatchTdb tdbBroad.ra wgEncodeBroadHistone.ra
E wgEncodeBroadHistone.ra # for cleanup
make DBS=hg19
# check in 
make alpha DBS=hg19

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### Missing HUVEC H3K36me3 Peaks!
#Input signals:12
#Non-input sigs:115
#peaks:114
#Total:241
#expect 241 table files + 127*2 BAMS + 127*2 BAIs + 127*2 fastqs=1003 files Found 1056 files
#mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone replicate=1"
#rep1: 254 objects
#rep2: 249 objects
#rep3:  40 objects
#
#fastq:  271 rep1:127 rep2:124 rep3:20
#bam:    272 rep1:127 rep2:125 rep3:20
#bai:    272 rep1:127 rep2:125 rep3:20
#bw:              127                   (115+12) OKAY  
#peaks:           114                   Expected 115 Missing HUVEC H3K36me3 Peaks
#expect 241 table files + 294 BAMS + 294 BAIs + 294 fastqs=1063 files Found 1056 files
# Expected but missing files:
#wgEncodeBroadHistoneK562ControlStdAlnRep2.bam.bai*3  (BAM,BAI,FASTQ)
#wgEncodeBroadHistoneK562H3k9me1StdAlnRep2.bam.bai*3  (BAM,BAI,FASTQ)
#wgEncodeBroadHistoneHepg2H3k27me3StdRawDataRep2.fastq.gz
# Conclusion: missing 4 things:
- HUVEC/H3K36me3 PEAKS are missing (signals and 3 replicates of bam and fastq are here)
- K562/H3K9me1 replicate 2 is missing missing BAM and FASTQ (rep1 is here)
- K562/Control replicate 2 is missing BAM and FASTQ  (rep1 is here)
- HepG2/H3K27me3 replicate 2 is missing FASTQ only (rep1 fastq is here)


2010-11-17 Update Illumina machine metadata from Tim Durham's list
==================================================================
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeBroadHistone labVersion=" -count
No metadata met your selection criteria
0 objects
0 variables
0 values
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=GM12878 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=H1-hESC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe "
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HMEC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K9me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H3K9me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMM antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H2A.Z replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H2A.Z replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HSMMtube antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=CTCF replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=Control replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K27ac replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K36me3 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K4me3 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9ac  replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9ac  replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9ac  replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H3K9me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=H4K20me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=Pol2(b) replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HUVEC antibody=Pol2(b) replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HeLa-S3 antibody=Pol2(b) replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H2A.Z replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H2A.Z replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=HepG2 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=K562 antibody=Pol2(b) replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NH-A antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=CTCF replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27ac replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K27me3 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K36me3 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me2 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K4me3 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9ac replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H3K9me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=H4K20me1 replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=Pol2(b) replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHEK antibody=Pol2(b) replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=Control replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=Control replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone cell=NHLF antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"

mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone labVersion="
Using table named 'hg19.metaDb_tdreszer'.
531 objects
11143 variables
11143 values

mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=Alignments labVersion="
Using table named 'hg19.metaDb_tdreszer'.
266 objects
5852 variables
5852 values
mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=Alignments"
Using table named 'hg19.metaDb_tdreszer'.
272 objects
5978 variables
5978 values
mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=Alignments labVersion!="
Using table named 'hg19.metaDb_tdreszer'.
6 objects
126 variables
126 values
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone view=Alignments labVersion!=" | grep metaObject
metaObject wgEncodeBroadHistoneHuvecH3k9me1StdAlnRep2
metaObject wgEncodeBroadHistoneHuvecH3k9me1StdAlnRep3
metaObject wgEncodeBroadHistoneHuvecH4k20me1StdAlnRep1
metaObject wgEncodeBroadHistoneHuvecH4k20me1StdAlnRep2
metaObject wgEncodeBroadHistoneHuvecPol2bStdAlnRep2
metaObject wgEncodeBroadHistoneHuvecPol2bStdAlnRep3
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone view=Alignments labVersion!=" -count
Using table named 'hg19.metaDb_tdreszer'.
No metadata met your selection criteria
0 objects
0 variables
0 values

mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=RawData labVersion="
Using table named 'hg19.metaDb_tdreszer'.
265 objects
5291 variables
5291 values
[hgwdev:tdreszer testing> mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=RawData"
Using table named 'hg19.metaDb_tdreszer'.
271 objects
5405 variables
5405 values
mdbPrint hg19 -count -vars="composite=wgEncodeBroadHistone view=RawData labVersion!="
Using table named 'hg19.metaDb_tdreszer'.
6 objects
114 variables
114 values
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone view=RawData labVersion!=" | grep metaObject
metaObject wgEncodeBroadHistoneHuvecH3k9me1StdRawDataRep2
metaObject wgEncodeBroadHistoneHuvecH3k9me1StdRawDataRep3
metaObject wgEncodeBroadHistoneHuvecH4k20me1StdRawDataRep1
metaObject wgEncodeBroadHistoneHuvecH4k20me1StdRawDataRep2
metaObject wgEncodeBroadHistoneHuvecPol2bStdRawDataRep2
metaObject wgEncodeBroadHistoneHuvecPol2bStdRawDataRep3
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone view=RawData labVersion!=" -count
Using table named 'hg19.metaDb_tdreszer'.
No metadata met your selection criteria
0 objects
0 variables
0 values

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone labVersion=" -countUsing table named 'hg19.metaDb_tdreszer'.
543 objects
11395 variables
11395 values
# Now all bams and fastqs in hg19 have labVersions

mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra 
gdiff wgEncodeBroadHistone.ra
gdiff wgEncodeBroadHistone.ra | grep -v @@ | grep -v labVersion
1 wgEncodeBroadHistone.ra
diff --git a/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra b/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
index c218bc5..dcc210e 100644
--- a/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
+++ b/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
-# MAGIC: -915570537
+# MAGIC: 654812764
# Only lab version has changed.
git add, ci, push
make alpha DBS=hg19
encodeDownloadsPage.pl -db=hg19 index.html

# Now Extend Ilumina mdb update to hg18
mdbPrint hg18 -table=metaDb -vars="composite=wgEncodeBroadHistone labVersion=" -count
No metadata met your selection criteria
0 objects
0 variables
0 values
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe "
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K9me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H3K9me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=CTCF replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H2A.Z replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H2A.Z replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H3K9me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=Pol2(b) replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H2A.Z replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K79me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K79me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=H3K9me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
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mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=CTCF replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K27ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K27ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K27me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K27me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K36me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K36me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me2 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me2 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me3 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K4me3 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K9ac replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H3K9ac replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H4K20me1 replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=H4K20me1 replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=GM12878 antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=H1-hESC antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HMEC antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMM antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HSMMtube antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe and Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HUVEC antibody=Input replicate=3" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HeLa-S3 antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=HepG2 antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=K562 antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NH-A antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHEK antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=Input replicate=1" -var=labVersion -val="Illumina Genome Analyzer IIx"
mdbUpdate hg18 -vars="composite=wgEncodeBroadChipSeq cell=NHLF antibody=Input replicate=2" -var=labVersion -val="Illumina Genome Analyzer IIe"

mdbPrint hg18 -count -vars="composite=wgEncodeBroadChipSeq view=Alignments labVersion="
184 objects
3582 variables
3582 values
mdbPrint hg18 -count -vars="composite=wgEncodeBroadChipSeq view=Alignments labVersion!="
Using table named 'hg18.metaDb_tdreszer'.
2 objects
40 variables
40 values
mdbPrint hg18 -vars="composite=wgEncodeBroadChipSeq view=Alignments labVersion!=" | grep metaObj
metaObject wgEncodeBroadChipSeqAlignmentsRep2K562ControlV2
metaObject wgEncodeBroadChipSeqAlignmentsRep2K562H3k9me1V2

mdbPrint hg18 -count -vars="composite=wgEncodeBroadChipSeq view=RawData labVersion="
Using table named 'hg18.metaDb_tdreszer'.
184 objects
3312 variables
3312 values
mdbPrint hg18 -count -vars="composite=wgEncodeBroadChipSeq view=RawData labVersion!="
Using table named 'hg18.metaDb_tdreszer'.
2 objects
34 variables
34 values
mdbPrint hg18 -vars="composite=wgEncodeBroadChipSeq view=RawData labVersion!=" | grep metaObj
Using table named 'hg18.metaDb_tdreszer'.
objects:2  vars:34
metaObject wgEncodeBroadChipSeqRawDataRep2K562Control
metaObject wgEncodeBroadChipSeqRawDataRep2K562H3k9me1
# Interesting: same 2 as missing in hg19

mdbPrint hg18 -vars="composite=wgEncodeBroadChipSeq" > wgEncodeBroadChipSeq.ra 
gdiff wgEncodeBroadChipSeq.ra | grep -v @@ | grep -v labVersion
man/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra
index 056fea8..167ae50 100644
--- a/src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra
+++ b/src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra
-# MAGIC: -380800573
+# MAGIC: 487550617

git add, ci, push
make alpha DBS=hg18
encodeDownloadsPage.pl -db=hg18 index.html



2010-11-17 New submissions
==========================
rm mdbBroad.ra
cat 2978/out/mdb.txt >> mdbBroad.ra
cat 2979/out/mdb.txt >> mdbBroad.ra
cat 2980/out/mdb.txt >> mdbBroad.ra
cat 2982/out/mdb.txt >> mdbBroad.ra
cat 2969/out/mdb.txt >> mdbBroad.ra
cat 2981/out/mdb.txt >> mdbBroad.ra
cat 2970/out/mdb.txt >> mdbBroad.ra
cat 2983/out/mdb.txt >> mdbBroad.ra
cat 2984/out/mdb.txt >> mdbBroad.ra
cat 2985/out/mdb.txt >> mdbBroad.ra
cat 2986/out/mdb.txt >> mdbBroad.ra
cat 2987/out/mdb.txt >> mdbBroad.ra
cat 2988/out/mdb.txt >> mdbBroad.ra
cat 2989/out/mdb.txt >> mdbBroad.ra
cat 2990/out/mdb.txt >> mdbBroad.ra
cat 2991/out/mdb.txt >> mdbBroad.ra
cat 2992/out/mdb.txt >> mdbBroad.ra
mv mdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e mdbBroad.ra # Actually, nothing really needs to be changed.
 mdbUpdate hg19 mdbBroad.ra
Using table named 'hg19.metaDb_tdreszer'.
Read 88 metadata objects from hg19
Affected 1716 row(s) in hg19.metaDb_tdreszer
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra 
gold wgEncodeBroadHistone.ra
git update, add, ci, push

rm tdbBroad.ra
cat 2978/out/trackDb.ra >> tdbBroad.ra
cat 2979/out/trackDb.ra >> tdbBroad.ra
cat 2980/out/trackDb.ra >> tdbBroad.ra
cat 2982/out/trackDb.ra >> tdbBroad.ra
cat 2969/out/trackDb.ra >> tdbBroad.ra
cat 2981/out/trackDb.ra >> tdbBroad.ra
cat 2970/out/trackDb.ra >> tdbBroad.ra
cat 2983/out/trackDb.ra >> tdbBroad.ra
cat 2984/out/trackDb.ra >> tdbBroad.ra
cat 2985/out/trackDb.ra >> tdbBroad.ra
cat 2986/out/trackDb.ra >> tdbBroad.ra
cat 2987/out/trackDb.ra >> tdbBroad.ra
cat 2988/out/trackDb.ra >> tdbBroad.ra
cat 2989/out/trackDb.ra >> tdbBroad.ra
cat 2990/out/trackDb.ra >> tdbBroad.ra
cat 2991/out/trackDb.ra >> tdbBroad.ra
cat 2992/out/trackDb.ra >> tdbBroad.ra
mv tdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e tdbBroad.ra # edit subGroups, longLabels and shortLabels
encodePatchTdb metaDb/alpha/testing/tdbBroad.ra wgEncodeBroadHistone.ra

make DBS=hg19
Check in sandbox.  Fine.

git up, add,ci,push
make alpha DBS=hg19

/cluster/data/encode/pipeline/bin/encodeStatus.pl 2978 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2979 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2980 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2982 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2969 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2981 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2970 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2983 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2984 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2985 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2986 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2987 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2988 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2989 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2990 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2991 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 2992 displayed

hgsql encpipeline_prod
select id,name,status, user_id from projects where name like "BI_%" and status = "displayed";
+------+---------------------------+-----------+---------+
| id   | name                      | status    | user_id |
+------+---------------------------+-----------+---------+
| 2969 | BI_HepG2_H3K27me3         | displayed |      34 | 
| 2970 | BI_Huvec_H3K36me3         | displayed |      34 | 
| 2978 | BI_GM12878_H2A.Z          | displayed |      34 | 
| 2979 | BI_GM12878_H3K79me2       | displayed |      34 | 
| 2980 | BI_GM12878_H3K9me3        | displayed |      34 | 
| 2981 | BI_HSMM_H2A.Z             | displayed |      34 | 
| 2982 | BI_HeLaS3_H3K27me3        | displayed |      34 | 
| 2983 | BI_K562_H2A.Z             | displayed |      34 | 
| 2984 | BI_K562_H3K79me2          | displayed |      34 | 
| 2985 | BI_K562_H3K9me3           | displayed |      34 | 
| 2986 | BI_NH-Osteoblast_CTCF     | displayed |      34 | 
| 2987 | BI_NH-Osteoblast_H2A.Z    | displayed |      34 | 
| 2988 | BI_NH-Osteoblast_H3K27ac  | displayed |      34 | 
| 2989 | BI_NH-Osteoblast_H3K36me3 | displayed |      34 | 
| 2990 | BI_NH-Osteoblast_H3K4me1  | displayed |      34 | 
| 2991 | BI_NH-Osteoblast_H3K4me2  | displayed |      34 | 
| 2992 | BI_NH-Osteoblast_H3K9me3  | displayed |      34 | 
+------+---------------------------+-----------+---------+
17 rows in set (0.00 sec)
update projects set name = "Broad 2010-11-12 HepG2_H3K27me3" where id = 2969;
update projects set name = "Broad 2010-11-12 Huvec_H3K36me3" where id = 2970;
update projects set name = "Broad 2010-11-12 GM12878_H2A.Z" where id = 2978;
update projects set name = "Broad 2010-11-12 GM12878_H3K79me2" where id = 2979;
update projects set name = "Broad 2010-11-12 GM12878_H3K9me3" where id = 2980;
update projects set name = "Broad 2010-11-12 HSMM_H2A.Z" where id = 2981;
update projects set name = "Broad 2010-11-12 HeLaS3_H3K27me3" where id = 2982;
update projects set name = "Broad 2010-11-12 K562_H2A.Z" where id = 2983;
update projects set name = "Broad 2010-11-12 K562_H3K79me2" where id = 2984;
update projects set name = "Broad 2010-11-12 K562_H3K9me3" where id = 2985;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_CTCF" where id = 2986;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H2A.Z" where id = 2987;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H3K27ac" where id = 2988;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H3K36me3" where id = 2989;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H3K4me1" where id = 2990;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H3K4me2" where id = 2991;
update projects set name = "Broad 2010-11-12 NH-Osteoblast_H3K9me3" where id = 2992;
select id,name,status, user_id from projects where name like "BI_%";
+------+------------------+-----------------+---------+
| id   | name             | status          | user_id |
+------+------------------+-----------------+---------+
| 1187 | bigWigTest       | revoked         |      31 | 
| 2993 | BI_NHDF_CTCF     | validate failed |      34 | 
| 2994 | BI_NHDF_H3K27ac  | validate failed |      34 | 
| 2995 | BI_NHDF_H3K27me3 | validate failed |      34 | 
| 2996 | BI_NHDF_H3K36me3 | validate failed |      34 | 
| 2997 | BI_NHDF_H3K4me2  | validate failed |      34 | 
| 2998 | BI_NHDF_H3K4me3  | validate failed |      34 | 
| 2999 | BI_NHDF_H3K9ac   | validate failed |      34 | 
+------+------------------+-----------------+---------+
8 rows in set (0.00 sec)

At this point, waiting for Broad on:
- 8 submissions for cellLine NHDF-Ad which are mapped as male but cell line shows female
- K562/H3K9me1 replicate 2 is missing missing BAM and FASTQ (rep1 is here)
- K562/Control replicate 2 is missing BAM and FASTQ  (rep1 is here)
The 2 missing replicates are not likely to be provided.


2010-11-22 NHDF has been submitted correctly
============================================
select id,name,status,user_id from projects where name like "BI_%";
+------+----------------------+-----------------+---------+
| id   | name                 | status          | user_id |
+------+----------------------+-----------------+---------+
| 2993 | BI_NHDF_CTCF         | validate failed |      34 | 
| 2994 | BI_NHDF_H3K27ac      | validate failed |      34 | 
| 2995 | BI_NHDF_H3K27me3     | validate failed |      34 | 
| 2996 | BI_NHDF_H3K36me3     | validate failed |      34 | 
| 2997 | BI_NHDF_H3K4me2      | validate failed |      34 | 
| 2998 | BI_NHDF_H3K4me3      | validate failed |      34 | 
| 2999 | BI_NHDF_H3K9ac       | validate failed |      34 | 
| 3006 | BI_NHDF_CTCF (1)     | loaded          |      34 | 
| 3007 | BI_NHDF_H3K27ac (1)  | loaded          |      34 | 
| 3008 | BI_NHDF_H3K27me3 (1) | loaded          |      34 | 
| 3009 | BI_NHDF_H3K36me3 (1) | loaded          |      34 | 
| 3010 | BI_NHDF_H3K4me2 (1)  | loaded          |      34 | 
| 3011 | BI_NHDF_H3K4me3 (1)  | loaded          |      34 | 
| 3012 | BI_NHDF_H3K9ac (1)   | loaded          |      34 | 
+------+----------------------+-----------------+---------+
15 rows in set (0.00 sec)

rm mdbBroad.ra
cat 3006/out/mdb.txt >> mdbBroad.ra
cat 3007/out/mdb.txt >> mdbBroad.ra
cat 3008/out/mdb.txt >> mdbBroad.ra
cat 3009/out/mdb.txt >> mdbBroad.ra
cat 3010/out/mdb.txt >> mdbBroad.ra
cat 3011/out/mdb.txt >> mdbBroad.ra
cat 3012/out/mdb.txt >> mdbBroad.ra
mv mdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e mdbBroad.ra # Actually, nothing really needs to be changed.
mdbUpdate hg19 mdbBroad.ra
Using table named 'hg19.metaDb_tdreszer'.
Read 42 metadata objects from hg19
Affected 819 row(s) in hg19.metaDb_tdreszer
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra 
gold wgEncodeBroadHistone.ra
git update, add, ci, push

rm tdbBroad.ra
cat 3006/out/trackDb.ra >> tdbBroad.ra
cat 3007/out/trackDb.ra >> tdbBroad.ra
cat 3008/out/trackDb.ra >> tdbBroad.ra
cat 3009/out/trackDb.ra >> tdbBroad.ra
cat 3010/out/trackDb.ra >> tdbBroad.ra
cat 3011/out/trackDb.ra >> tdbBroad.ra
cat 3012/out/trackDb.ra >> tdbBroad.ra
mv tdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e tdbBroad.ra # edit subGroups, longLabels and shortLabels
encodePatchTdb metaDb/alpha/testing/tdbBroad.ra wgEncodeBroadHistone.ra

make DBS=hg19
Check in sandbox.  Fine.

git up, add,ci,push
make alpha DBS=hg19

encodeDownloadsPage.pl -db=hg19 index.html
1237 files
encodeDownloadsPage.pl -db=hg19 -checksum index.html &

/cluster/data/encode/pipeline/bin/encodeStatus.pl 3006 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3007 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3008 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3009 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3010 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3011 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3012 displayed
update projects set name = "Broad 2010-11-19 NHDF_CTCF" where id = 3006;
update projects set name = "Broad 2010-11-19 NHDF_H3K27ac" where id = 3007;
update projects set name = "Broad 2010-11-19 NHDF_H3K27me3" where id = 3008;
update projects set name = "Broad 2010-11-19 NHDF_H3K36me3" where id = 3009;
update projects set name = "Broad 2010-11-19 NHDF_H3K4me2" where id = 3010;
update projects set name = "Broad 2010-11-19 NHDF_H3K4me3" where id = 3011;
update projects set name = "Broad 2010-11-19 NHDF_H3K9ac" where id = 3012;

At this point, waiting for Broad on:
- K562/H3K9me1 replicate 2 is missing missing BAM and FASTQ (rep1 is here)  WILL NOT BE SUBMITTED
- K562/Control replicate 2 is missing BAM and FASTQ  (rep1 is here)         WILL NOT BE SUBMITTED
The 2 missing replicates are not likely to be provided.

Missing Controls for NHDF-Ad and Osteobl

2010-12-06 Two missing controls were submitted
==============================================
rm mdbBroad.ra
cat 3073/out/mdb.txt >> mdbBroad.ra
cat 3074/out/mdb.txt >> mdbBroad.ra
mv mdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e mdbBroad.ra # Actually, nothing really needs to be changed.
mdbUpdate hg19 mdbBroad.ra
Using table named 'hg19.metaDb_tdreszer'.
Read 10 metadata objects from hg19
Affected 194 row(s) in hg19.metaDb_tdreszer
mdbPrint hg19 -vars="composite=wgEncodeBroadHistone" > wgEncodeBroadHistone.ra 
gold wgEncodeBroadHistone.ra
git update, add, ci, push

rm tdbBroad.ra
cat 3073/out/trackDb.ra >> tdbBroad.ra
cat 3074/out/trackDb.ra >> tdbBroad.ra
mv tdbBroad.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/testing/
e tdbBroad.ra # edit subGroups, longLabels and shortLabels
encodePatchTdb metaDb/alpha/testing/tdbBroad.ra wgEncodeBroadHistone.ra

make DBS=hg19
Check in sandbox.  Fine.

git up, add,ci,push
make alpha DBS=hg19

encodeDownloadsPage.pl -db=hg19 index.html
1251 files
encodeDownloadsPage.pl -db=hg19 -checksum index.html &

/cluster/data/encode/pipeline/bin/encodeStatus.pl 3073 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3074 displayed

hgsql encpipeline_prod
select id,name,status, user_id from projects where name like "BI_%" and status = "displayed";
| 3073 | BI_NH-Osteoblast_WCE | displayed |      34 | 
| 3074 | BI_NHDF_WCE          | displayed |      34 | 
update projects set name = "Broad 2010-12-06 NH-Osteoblast_WCE" where id = 3073;
update projects set name = "Broad 2010-12-06 NHDF_WCE" where id = 3074;

2011-01-03 Set up pushQ entry for Broad Histone hg19 release1
=============================================================
cd {downloadsDir}
mkdir release1
cd release1
ln ../*.gz .
ln ../*.bam .
ln ../*.bai .
ln ../*.bigWig .
cp ../index.html .
cp ../files.txt .
cp ../md5sum.txt .
cd ..
ll *.bam | wl
321
ll release1/*.bam | wl
321
ll *.bai | wl
321
ll release1/*.bai | wl
321
ll *.gz | wl
458
ll release1/*.gz | wl
458
ll *.bigWig | wl
151
ll release1/*.bigWig | wl
151
ll *.broadPeak* | wl
137
ll release1/*.broadPeak* | wl
137
ll | grep -v fastq | grep -v ".bam" | grep -v bigWig | grep -v Peak
-rw-rw-r--  1 tdreszer   protein       6948 Nov  8 14:43 bai.txt
-rw-rw-r--  1 tdreszer   protein       6891 Nov  8 14:40 bai.txt~
-rw-rw-r--  1 tdreszer   protein       6948 Nov  8 14:41 bai2.txt
-rw-rw-r--  1 tdreszer   protein       6448 Nov  8 14:41 bai2.txt~
-rw-r--r--  1 braney     protein      37570 Aug  2 15:44 fileList.txt
-rw-rw-r--  1 braney     protein     464475 Dec 20 15:44 files.txt
-rw-rw-r--  1 braney     protein     119704 Jul 26 12:52 files.txt.00
-rwxrwxr-x  1 braney     protein     786519 Dec 19 21:45 index.html
-rw-rw-r--  1 braney     protein     105548 Dec 20 00:38 md5sum.txt
-rw-rw-r--  1 cricket    protein        829 Nov 30 14:05 preamble.html
drwxrwxr-x  2 tdreszer   protein     131072 Jan  3 12:13 release1
-rwxrwxr-x  1 tdreszer   protein     827975 Dec 20 15:44 sort.html
-rw-rw-r--  1 tdreszer   protein      10786 Oct 22 16:04 tmp.txt
-rw-rw-r--  1 tdreszer   protein     256749 Jan  3 12:15 wgEncodeBroadHistone.notes.hg19.release1.txt
ls -1 | wl
1936
ls -1 release1/ | wl
1254
## What is missing?
*.md5sum
ls -1 | grep -v md5sum | wl
1264
ls -l | grep -v md5sum | grep -v fastq | grep -v ".bam" | grep -v bigWig | grep -v Peak | grep -v "index.html" | grep -v "files.txt"
-rw-rw-r-- 1 tdreszer   protein       6948 Nov  8 14:43 bai.txt
-rw-rw-r-- 1 tdreszer   protein       6891 Nov  8 14:40 bai.txt~
-rw-rw-r-- 1 tdreszer   protein       6948 Nov  8 14:41 bai2.txt
-rw-rw-r-- 1 tdreszer   protein       6448 Nov  8 14:41 bai2.txt~
-rw-r--r-- 1 braney     protein      37570 Aug  2 15:44 fileList.txt
-rw-rw-r-- 1 braney     protein     464475 Dec 20 15:44 files.txt
-rw-rw-r-- 1 braney     protein     119704 Jul 26 12:52 files.txt.00
-rwxrwxr-x 1 braney     protein     786519 Dec 19 21:45 index.html
-rw-rw-r-- 1 cricket    protein        829 Nov 30 14:05 preamble.html
drwxrwxr-x 2 tdreszer   protein     131072 Jan  3 12:13 release1
-rwxrwxr-x 1 tdreszer   protein     827975 Dec 20 15:44 sort.html
-rw-rw-r-- 1 tdreszer   protein     100093 Jan  3 12:34 tmp.txt
-rw-rw-r-- 1 tdreszer   protein      63046 Jan  3 12:34 tmp2.txt
# A Okay

~/bin/scripts/encodeMkChangeNotes hg19 release1 - >  wgEncodeBroadHistone.release1.notes
# lots of bam warnings: For ChipSeq bams are not tables
e  wgEncodeBroadHistone.release1.notes # remove bam errors
mv  wgEncodeBroadHistone.release1.notes ~/kent/src/hg/makeDb/doc/encodeDccHg19/
git add, ci, push
# make a pushQ entry: encodePushQ.56

2011-01-13 Broad now in QA
==========================
select id,name,status from projects where name like "Broad%" and status = "displayed" order by id;
+------+------------------------------------------+-----------+
| id   | name                                     | status    |
+------+------------------------------------------+-----------+
| 1680 | Broad 2010-06-21 CTCF, NHEK, std         | displayed | 
| 1683 | Broad 2010-06-21 H3K36me3, HSMMtube, std | displayed | 
| 1684 | Broad 2010-06-21 H3K36me3, HepG2, std    | displayed | 
| 1685 | Broad 2010-06-21 H3K27me3, NHLF, std     | displayed | 
| 1686 | Broad 2010-06-21 Control, HSMMtube, std  | displayed | 
| 1687 | Broad 2010-06-21 H3K4me2, HSMM, std      | displayed | 
| 1688 | Broad 2010-06-21 H3K9me1, NHEK, std      | displayed | 
| 1689 | Broad 2010-06-21 H3K27me3, HUVEC, std    | displayed | 
| 1690 | Broad 2010-06-21 H3K36me3, HMEC, std     | displayed | 
| 1691 | Broad 2010-06-21 H3K27me3, HSMM, std     | displayed | 
| 1692 | Broad 2010-06-21 H3K9ac, HUVEC, std      | displayed | 
| 1693 | Broad 2010-06-21 CTCF, HSMM, std         | displayed | 
| 1694 | Broad 2010-06-21 H3K27ac, HeLa-S3, std   | displayed | 
| 1695 | Broad 2010-06-21 H3K4me3, HUVEC, std     | displayed | 
| 1696 | Broad 2010-06-21 H3K4me3, K562, std      | displayed | 
| 1697 | Broad 2010-06-21 H3K4me2, NHEK, std      | displayed | 
| 1698 | Broad 2010-06-21 Control, HUVEC, std     | displayed | 
| 1699 | Broad 2010-06-21 H4K20me1, NHLF, std     | displayed | 
| 1700 | Broad 2010-06-21 H4K20me1, K562, std     | displayed | 
| 1701 | Broad 2010-06-21 H3K27ac, K562, std      | displayed | 
| 1702 | Broad 2010-06-21 H3K9ac, HMEC, std       | displayed | 
| 1703 | Broad 2010-06-21 H3K4me1, NHLF, std      | displayed | 
| 1704 | Broad 2010-06-21 H2A.Z, HSMMtube, std    | displayed | 
| 1705 | Broad 2010-06-21 H3K9ac, H1-hESC, std    | displayed | 
| 1706 | Broad 2010-06-21 H3K4me3, HepG2, std     | displayed | 
| 1707 | Broad 2010-06-21 CTCF, NHLF, std         | displayed | 
| 1708 | Broad 2010-06-21 H3K9ac, NHLF, std       | displayed | 
| 1709 | Broad 2010-06-21 CTCF, HeLa-S3, std      | displayed | 
| 1710 | Broad 2010-06-21 Control, NHLF, std      | displayed | 
| 1711 | Broad 2010-06-21 H4K20me1, HeLa-S3, std  | displayed | 
| 1712 | Broad 2010-06-21 H3K27me3, K562, std     | displayed | 
| 1713 | Broad 2010-06-21 H3K4me1, HSMM, std      | displayed | 
| 1714 | Broad 2010-06-21 H3K4me2, K562, std      | displayed | 
| 1715 | Broad 2010-06-21 H4K20me1, HSMM, std     | displayed | 
| 1716 | Broad 2010-06-21 H3K4me3, HSMMtube, std  | displayed | 
| 1717 | Broad 2010-06-21 H3K9me3, HSMM, std      | displayed | 
| 1718 | Broad 2010-06-21 H3K27ac, HSMM, std      | displayed | 
| 1719 | Broad 2010-06-21 Control, HepG2, std     | displayed | 
| 1720 | Broad 2010-06-21 H3K9me1, K562, std      | displayed | 
| 1721 | Broad 2010-06-21 H3K27me3, H1-hESC, std  | displayed | 
| 1722 | Broad 2010-06-21 H3K36me3, HUVEC, std    | displayed | 
| 1723 | Broad 2010-06-21 H3K4me3, NHEK, std      | displayed | 
| 1724 | Broad 2010-06-21 H3K79me2, HSMMtube, std | displayed | 
| 1725 | Broad 2010-06-21 H3K4me1, NHEK, std      | displayed | 
| 1726 | Broad 2010-06-21 H3K36me3, K562, std     | displayed | 
| 1727 | Broad 2010-06-21 Pol2(b), HUVEC, std     | displayed | 
| 1728 | Broad 2010-06-21 H4K20me1, HSMMtube, std | displayed | 
| 1729 | Broad 2010-06-21 H3K9me1, HUVEC, std     | displayed | 
| 1730 | Broad 2010-06-21 H3K79me2, HSMM, std     | displayed | 
| 1731 | Broad 2010-06-21 H3K27ac, HUVEC, std     | displayed | 
| 1732 | Broad 2010-06-21 H3K4me2, HUVEC, std     | displayed | 
| 1733 | Broad 2010-06-21 H3K27me3, NHEK, std     | displayed | 
| 1734 | Broad 2010-06-21 H3K36me3, H1-hESC, std  | displayed | 
| 1735 | Broad 2010-06-21 H3K4me1, K562, std      | displayed | 
| 1737 | Broad 2010-06-21 Pol2(b), NHEK, std      | displayed | 
| 1738 | Broad 2010-06-21 H3K27ac, NHLF, std      | displayed | 
| 1739 | Broad 2010-06-21 H3K4me2, NHLF, std      | displayed | 
| 1741 | Broad 2010-06-21 H3K27ac, HepG2, std     | displayed | 
| 1742 | Broad 2010-06-21 CTCF, HMEC, std         | displayed | 
| 1743 | Broad 2010-06-21 Pol2(b), HeLa-S3, std   | displayed | 
| 1744 | Broad 2010-06-21 H3K79me2, HeLa-S3, std  | displayed | 
| 1745 | Broad 2010-06-21 H3K4me3, H1-hESC, std   | displayed | 
| 1746 | Broad 2010-06-21 H3K9ac, HSMMtube, std   | displayed | 
| 1747 | Broad 2010-06-21 H3K79me2, HepG2, std    | displayed | 
| 1748 | Broad 2010-06-21 H3K9ac, K562, std       | displayed | 
| 1749 | Broad 2010-06-21 H3K27ac, HSMMtube, std  | displayed | 
| 1750 | Broad 2010-06-21 H3K36me3, NHLF, std     | displayed | 
| 1751 | Broad 2010-06-21 H3K4me3, HeLa-S3, std   | displayed | 
| 1752 | Broad 2010-06-21 Control, K562, std      | displayed | 
| 1753 | Broad 2010-06-21 H3K27ac, H1-hESC, std   | displayed | 
| 1754 | Broad 2010-06-21 H3K36me3, NHEK, std     | displayed | 
| 1755 | Broad 2010-06-21 H3K4me2, HeLa-S3, std   | displayed | 
| 1756 | Broad 2010-06-21 H3K4me3, HSMM, std      | displayed | 
| 1757 | Broad 2010-06-21 H3K4me2, HMEC, std      | displayed | 
| 1758 | Broad 2010-06-21 H4K20me1, HepG2, std    | displayed | 
| 1759 | Broad 2010-06-21 H3K4me1, HMEC, std      | displayed | 
| 1760 | Broad 2010-06-21 Control, H1-hESC, std   | displayed | 
| 1761 | Broad 2010-06-21 H3K4me2, HepG2, std     | displayed | 
| 1762 | Broad 2010-06-21 H3K36me3, HSMM, std     | displayed | 
| 1763 | Broad 2010-06-21 H4K20me1, HUVEC, std    | displayed | 
| 1764 | Broad 2010-06-21 H3K4me1, HSMMtube, std  | displayed | 
| 1765 | Broad 2010-06-21 H3K9ac, HepG2, std      | displayed | 
| 1766 | Broad 2010-06-21 H3K4me2, HSMMtube, std  | displayed | 
| 1767 | Broad 2010-06-21 CTCF, HSMMtube, std     | displayed | 
| 1769 | Broad 2010-06-21 CTCF, K562, std         | displayed | 
| 1770 | Broad 2010-06-21 H3K27me3, HMEC, std     | displayed | 
| 1771 | Broad 2010-06-21 Control, HeLa-S3, std   | displayed | 
| 1772 | Broad 2010-06-21 H3K27ac, NHEK, std      | displayed | 
| 1773 | Broad 2010-06-21 Control, HSMM, std      | displayed | 
| 1774 | Broad 2010-06-21 H4K20me1, H1-hESC, std  | displayed | 
| 1775 | Broad 2010-06-21 Control, NHEK, std      | displayed | 
| 1776 | Broad 2010-06-21 H3K27ac, HMEC, std      | displayed | 
| 1777 | Broad 2010-06-21 H3K4me2, H1-hESC, std   | displayed | 
| 1778 | Broad 2010-06-21 H3K4me1, HUVEC, std     | displayed | 
| 1779 | Broad 2010-06-21 H3K4me3, NHLF, std      | displayed | 
| 1780 | Broad 2010-06-21 H3K36me3, HeLa-S3, std  | displayed | 
| 1781 | Broad 2010-06-21 CTCF, H1-hESC, std      | displayed | 
| 1782 | Broad 2010-06-21 H3K9ac, HSMM, std       | displayed | 
| 1783 | Broad 2010-06-21 H3K4me1, H1-hESC, std   | displayed | 
| 1784 | Broad 2010-06-21 H4K20me1, NHEK, std     | displayed | 
| 1785 | Broad 2010-06-21 H4K20me1, HMEC, std     | displayed | 
| 1786 | Broad 2010-06-21 Control, HMEC, std      | displayed | 
| 1787 | Broad 2010-06-21 CTCF, HepG2, std        | displayed | 
| 1788 | Broad 2010-06-21 H3K27me3, HepG2, std    | displayed | 
| 1789 | Broad 2010-06-21 Pol2(b), K562, std      | displayed | 
| 1790 | Broad 2010-06-21 CTCF, HUVEC, std        | displayed | 
| 1791 | Broad 2010-06-21 H3K9ac, HeLa-S3, std    | displayed | 
| 1792 | Broad 2010-06-21 H2A.Z, HepG2, std       | displayed | 
| 1793 | Broad 2010-06-21 H3K4me3, HMEC, std      | displayed | 
| 1794 | Broad 2010-06-21 H3K9ac, NHEK, std       | displayed | 
| 1877 | Broad_2010-07-12_NHLF                    | displayed | 
| 1878 | Broad_2010-07-12_GM12878_CTCF            | displayed | 
| 1879 | Broad_2010-07-12_GM12878_Control         | displayed | 
| 1880 | Broad_2010-07-12_GM12878_H3K27ac         | displayed | 
| 1881 | Broad_2010-07-12_GM12878_H3K27me3        | displayed | 
| 1882 | Broad_2010-07-12_GM12878_H3K36me3        | displayed | 
| 1883 | Broad_2010-07-12_GM12878_H3K4me1         | displayed | 
| 1884 | Broad_2010-07-12_GM12878_H3K4me2         | displayed | 
| 1885 | Broad_2010-07-12_GM12878_H3K4me3         | displayed | 
| 1886 | Broad_2010-07-12_GM12878_H3K9ac          | displayed | 
| 1887 | Broad_2010-07-12_GM12878_H4K20me1        | displayed | 
| 1888 | Broad_2010-07-12_NH-A_CTCF               | displayed | 
| 1889 | Broad_2010-07-12_NH-A_Control            | displayed | 
| 1890 | Broad_2010-07-12_NH-A_H3K27ac            | displayed | 
| 1891 | Broad_2010-07-12_NH-A_H3K27me3           | displayed | 
| 1892 | Broad_2010-07-12_NH-A_H3K36me3           | displayed | 
| 1893 | Broad_2010-07-12_NH-A_H3K4me1            | displayed | 
| 1894 | Broad_2010-07-12_NH-A_H3K4me3            | displayed | 
| 1895 | Broad_2010-07-12_H1-hESC                 | displayed | 
| 1896 | Broad_2010-07-12_K562                    | displayed | 
| 1897 | Broad_2010-07-12_HUVEC                   | displayed | 
| 1898 | Broad_2010-07-12_HeLa-S3                 | displayed | 
| 1899 | Broad_2010-07-12_HepG2                   | displayed | 
| 1900 | Broad_2010-07-12_HMEC                    | displayed | 
| 1901 | Broad_2010-07-12_HSMM                    | displayed | 
| 1902 | Broad_2010-07-12_HSMMtube                | displayed | 
| 1903 | Broad_2010-07-12_NHEK                    | displayed | 
| 1922 | Broad_2010-07-13_HeLa-S3_Control         | displayed | 
| 2551 | Broad 2010-10-22 HSMM-myotube H4K20me1   | displayed | 
| 2560 | Broad 2010-10-22 HSMM-myotube CTCF       | displayed | 
| 2561 | Broad 2010-10-22 HSMM-myotube H2A.Z      | displayed | 
| 2562 | Broad 2010-10-22 HSMM-myotube H3K27ac    | displayed | 
| 2563 | Broad 2010-10-22 HSMM-myotube H3K36me3   | displayed | 
| 2564 | Broad 2010-10-22 HSMM-myotube H3K4me1    | displayed | 
| 2565 | Broad 2010-10-22 HSMM-myotube H3K4me2    | displayed | 
| 2566 | Broad 2010-10-22 HSMM-myotube H3K4me3    | displayed | 
| 2567 | Broad 2010-10-22 HSMM-myotube H3K79me2   | displayed | 
| 2568 | Broad 2010-10-22 HSMM-myotube H3K9ac     | displayed | 
| 2569 | Broad 2010-10-22 HSMM-myotube WCE        | displayed | 
| 2570 | Broad 2010-10-22 HeLaS3 H3K27ac          | displayed | 
| 2571 | Broad 2010-10-22 HeLaS3 H3K36me3         | displayed | 
| 2572 | Broad 2010-10-22 HeLaS3 H3K4me2          | displayed | 
| 2573 | Broad 2010-10-22 HeLaS3 H3K4me3          | displayed | 
| 2574 | Broad 2010-10-22 HeLaS3 H3K79me2         | displayed | 
| 2575 | Broad 2010-10-22 HeLaS3 H3K9ac           | displayed | 
| 2576 | Broad 2010-10-22 HeLaS3 H4K20me1         | displayed | 
| 2577 | Broad 2010-10-22 HeLaS3 RNA-pol2         | displayed | 
| 2578 | Broad 2010-10-22 HeLaS3 WCE              | displayed | 
| 2579 | Broad 2010-10-22 HeLaS3 CTCF             | displayed | 
| 2580 | Broad 2010-10-22 NH-A CTCF               | displayed | 
| 2581 | Broad 2010-10-22 NH-A H3K27ac            | displayed | 
| 2582 | Broad 2010-10-22 NH-A H3K27me3           | displayed | 
| 2583 | Broad 2010-10-22 NH-A H3K4me1            | displayed | 
| 2584 | Broad 2010-10-22 NH-A H3K4me3            | displayed | 
| 2585 | Broad 2010-10-22 NH-A WCE                | displayed | 
| 2586 | Broad 2010-10-22 H1 H3K27ac              | displayed | 
| 2587 | Broad 2010-10-22 HepG2 H2A.Z             | displayed | 
| 2588 | Broad 2010-10-22 HepG2 H3K79me2          | displayed | 
| 2589 | Broad 2010-10-22 HSMM H3K79me2           | displayed | 
| 2590 | Broad 2010-10-22 HSMM H3K9me3            | displayed | 
| 2723 | Broad 2010-10-26 GM12878 CTCF            | displayed | 
| 2724 | Broad 2010-10-26 GM12878 H3K4me3         | displayed | 
| 2725 | Broad 2010-10-26 HMEC H3K9ac             | displayed | 
| 2726 | Broad 2010-10-26 HMEC H4K20me1           | displayed | 
| 2727 | Broad 2010-10-26 HMEC WCE                | displayed | 
| 2728 | Broad 2010-10-26 HepG2 H3K27me3          | displayed | 
| 2729 | Broad 2010-10-26 Huvec CTCF              | displayed | 
| 2730 | Broad 2010-10-26 Huvec H3K27ac           | displayed | 
| 2731 | Broad 2010-10-26 Huvec H3K27me3          | displayed | 
| 2732 | Broad 2010-10-26 Huvec H3K36me3          | displayed | 
| 2733 | Broad 2010-10-26 Huvec H3K4me1           | displayed | 
| 2734 | Broad 2010-10-26 Huvec H3K4me2           | displayed | 
| 2735 | Broad 2010-10-26 Huvec H3K4me3           | displayed | 
| 2736 | Broad 2010-10-26 Huvec H3K9ac            | displayed | 
| 2737 | Broad 2010-10-26 Huvec H3K9me1           | displayed | 
| 2738 | Broad 2010-10-26 Huvec H4K20me1          | displayed | 
| 2739 | Broad 2010-10-26 Huvec RNA-pol2          | displayed | 
| 2740 | Broad 2010-10-26 Huvec WCE               | displayed | 
| 2741 | Broad 2010-10-26 K562 CTCF               | displayed | 
| 2742 | Broad 2010-10-26 K562 H3K27ac            | displayed | 
| 2743 | Broad 2010-10-26 K562 H3K36me3           | displayed | 
| 2744 | Broad 2010-10-26 K562 H3K4me1            | displayed | 
| 2745 | Broad 2010-10-26 K562 H3K4me2            | displayed | 
| 2746 | Broad 2010-10-26 K562 H3K9me1            | displayed | 
| 2747 | Broad 2010-10-26 K562 H4K20me1           | displayed | 
| 2748 | Broad 2010-10-26 K562 RNA-pol2           | displayed | 
| 2749 | Broad 2010-10-26 K562 WCE                | displayed | 
| 2750 | Broad 2010-10-26 NHEK CTCF               | displayed | 
| 2751 | Broad 2010-10-26 NHEK H3K27ac            | displayed | 
| 2752 | Broad 2010-10-26 NHEK H3K27me3           | displayed | 
| 2753 | Broad 2010-10-26 NHEK H3K36me3           | displayed | 
| 2754 | Broad 2010-10-26 NHEK H3K4me1            | displayed | 
| 2755 | Broad 2010-10-26 NHEK H3K4me2            | displayed | 
| 2756 | Broad 2010-10-26 NHEK H3K4me3            | displayed | 
| 2757 | Broad 2010-10-26 NHEK H3K9ac             | displayed | 
| 2758 | Broad 2010-10-26 NHEK H3K9me1            | displayed | 
| 2759 | Broad 2010-10-26 NHEK H4K20me1           | displayed | 
| 2760 | Broad 2010-10-26 NHEK RNA-pol2           | displayed | 
| 2761 | Broad 2010-10-26 NHEK WCE                | displayed | 
| 2762 | Broad 2010-10-26 NHLF H3K4me2            | displayed | 
| 2796 | Broad 2010-11-05 H1 H3K4me1              | displayed | 
| 2800 | Broad 2010-11-05 GM12878_CTCF            | displayed | 
| 2801 | Broad 2010-11-05 GM12878_H3K27ac         | displayed | 
| 2802 | Broad 2010-11-05 GM12878_H3K27me3        | displayed | 
| 2803 | Broad 2010-11-05 GM12878_H3K36me3        | displayed | 
| 2804 | Broad 2010-11-05 GM12878_H3K4me1         | displayed | 
| 2805 | Broad 2010-11-05 GM12878_H3K4me2         | displayed | 
| 2806 | Broad 2010-11-05 GM12878_H3K4me3         | displayed | 
| 2807 | Broad 2010-11-05 GM12878_H3K9ac          | displayed | 
| 2808 | Broad 2010-11-05 GM12878_H4K20me1        | displayed | 
| 2809 | Broad 2010-11-05 GM12878_WCE             | displayed | 
| 2810 | Broad 2010-11-05 H1_CTCF                 | displayed | 
| 2811 | Broad 2010-11-05 H1_H3K27ac              | displayed | 
| 2812 | Broad 2010-11-05 H1_H3K27me3             | displayed | 
| 2813 | Broad 2010-11-05 H1_H3K36me3             | displayed | 
| 2814 | Broad 2010-11-05 H1_H3K4me2              | displayed | 
| 2815 | Broad 2010-11-05 H1_H3K4me3              | displayed | 
| 2816 | Broad 2010-11-05 H1_H3K9ac               | displayed | 
| 2817 | Broad 2010-11-05 H1_H4K20me1             | displayed | 
| 2818 | Broad 2010-11-05 H1_WCE                  | displayed | 
| 2819 | Broad 2010-11-05 HMEC_CTCF               | displayed | 
| 2820 | Broad 2010-11-05 HMEC_H3K27ac            | displayed | 
| 2821 | Broad 2010-11-05 HMEC_H3K27me3           | displayed | 
| 2822 | Broad 2010-11-05 HMEC_H3K36me3           | displayed | 
| 2823 | Broad 2010-11-05 HMEC_H3K4me1            | displayed | 
| 2824 | Broad 2010-11-05 HMEC_H3K4me2            | displayed | 
| 2825 | Broad 2010-11-05 HMEC_H3K4me3            | displayed | 
| 2826 | Broad 2010-11-05 HMEC_H3K9ac             | displayed | 
| 2827 | Broad 2010-11-05 HMEC_H4K20me1           | displayed | 
| 2828 | Broad 2010-11-05 HMEC_WCE                | displayed | 
| 2829 | Broad 2010-11-05 HSMM-myotube_CTCF       | displayed | 
| 2830 | Broad 2010-11-05 HSMM-myotube_H2A.Z      | displayed | 
| 2831 | Broad 2010-11-05 HSMM-myotube_H3K27ac    | displayed | 
| 2832 | Broad 2010-11-05 HSMM-myotube_H3K36me3   | displayed | 
| 2833 | Broad 2010-11-05 HSMM-myotube_H3K4me1    | displayed | 
| 2834 | Broad 2010-11-05 HSMM-myotube_H3K4me2    | displayed | 
| 2835 | Broad 2010-11-05 HSMM-myotube_H3K4me3    | displayed | 
| 2836 | Broad 2010-11-05 HSMM-myotube_H3K79me2   | displayed | 
| 2837 | Broad 2010-11-05 HSMM-myotube_H3K9ac     | displayed | 
| 2838 | Broad 2010-11-05 HSMM-myotube_H4K20me1   | displayed | 
| 2839 | Broad 2010-11-05 HSMM-myotube_WCE        | displayed | 
| 2840 | Broad 2010-11-05 HSMM_CTCF               | displayed | 
| 2841 | Broad 2010-11-05 HSMM_H3K27ac            | displayed | 
| 2842 | Broad 2010-11-05 HSMM_H3K27me3           | displayed | 
| 2843 | Broad 2010-11-05 HSMM_H3K36me3           | displayed | 
| 2844 | Broad 2010-11-05 HSMM_H3K4me1            | displayed | 
| 2845 | Broad 2010-11-05 HSMM_H3K4me2            | displayed | 
| 2846 | Broad 2010-11-05 HSMM_H3K4me3            | displayed | 
| 2847 | Broad 2010-11-05 HSMM_H3K79me2           | displayed | 
| 2848 | Broad 2010-11-05 HSMM_H3K9ac             | displayed | 
| 2849 | Broad 2010-11-05 HSMM_H3K9me3            | displayed | 
| 2850 | Broad 2010-11-05 HSMM_H4K20me1           | displayed | 
| 2851 | Broad 2010-11-05 HSMM_WCE                | displayed | 
| 2852 | Broad 2010-11-05 HeLaS3_CTCF             | displayed | 
| 2853 | Broad 2010-11-05 HeLaS3_H3K27ac          | displayed | 
| 2854 | Broad 2010-11-05 HeLaS3_H3K36me3         | displayed | 
| 2855 | Broad 2010-11-05 HeLaS3_H3K4me2          | displayed | 
| 2856 | Broad 2010-11-05 HeLaS3_H3K4me3          | displayed | 
| 2857 | Broad 2010-11-05 HeLaS3_H3K79me2         | displayed | 
| 2858 | Broad 2010-11-05 HeLaS3_H3K9ac           | displayed | 
| 2859 | Broad 2010-11-05 HeLaS3_H4K20me1         | displayed | 
| 2860 | Broad 2010-11-05 HeLaS3_RNA-pol2         | displayed | 
| 2861 | Broad 2010-11-05 HeLaS3_WCE              | displayed | 
| 2862 | Broad 2010-11-05 HepG2_CTCF              | displayed | 
| 2863 | Broad 2010-11-05 HepG2_H2A.Z             | displayed | 
| 2864 | Broad 2010-11-05 HepG2_H3K27ac           | displayed | 
| 2865 | Broad 2010-11-05 HepG2_H3K27me3          | displayed | 
| 2866 | Broad 2010-11-05 HepG2_H3K36me3          | displayed | 
| 2867 | Broad 2010-11-05 HepG2_H3K4me2           | displayed | 
| 2868 | Broad 2010-11-05 HepG2_H3K4me3           | displayed | 
| 2869 | Broad 2010-11-05 HepG2_H3K79me2          | displayed | 
| 2870 | Broad 2010-11-05 HepG2_H3K9ac            | displayed | 
| 2871 | Broad 2010-11-05 HepG2_H4K20me1          | displayed | 
| 2872 | Broad 2010-11-05 HepG2_WCE               | displayed | 
| 2873 | Broad 2010-11-05 Huvec_CTCF              | displayed | 
| 2874 | Broad 2010-11-05 Huvec_H3K27ac           | displayed | 
| 2875 | Broad 2010-11-05 Huvec_H3K27me3          | displayed | 
| 2876 | Broad 2010-11-05 Huvec_H3K4me1           | displayed | 
| 2877 | Broad 2010-11-05 Huvec_H3K4me2           | displayed | 
| 2878 | Broad 2010-11-05 Huvec_H3K4me3           | displayed | 
| 2879 | Broad 2010-11-05 Huvec_H3K9ac            | displayed | 
| 2880 | Broad 2010-11-05 Huvec_H3K9me1           | displayed | 
| 2881 | Broad 2010-11-05 Huvec_H4K20me1          | displayed | 
| 2882 | Broad 2010-11-05 Huvec_RNA-pol2          | displayed | 
| 2883 | Broad 2010-11-05 Huvec_WCE               | displayed | 
| 2884 | Broad 2010-11-05 K562_CTCF               | displayed | 
| 2885 | Broad 2010-11-05 K562_H3K27ac            | displayed | 
| 2886 | Broad 2010-11-05 K562_H3K27me3           | displayed | 
| 2887 | Broad 2010-11-05 K562_H3K36me3           | displayed | 
| 2888 | Broad 2010-11-05 K562_H3K4me1            | displayed | 
| 2889 | Broad 2010-11-05 K562_H3K4me2            | displayed | 
| 2890 | Broad 2010-11-05 K562_H3K4me3            | displayed | 
| 2891 | Broad 2010-11-05 K562_H3K9ac             | displayed | 
| 2892 | Broad 2010-11-05 K562_H3K9me1            | displayed | 
| 2893 | Broad 2010-11-05 K562_H4K20me1           | displayed | 
| 2894 | Broad 2010-11-05 K562_RNA-pol2           | displayed | 
| 2895 | Broad 2010-11-05 K562_WCE                | displayed | 
| 2896 | Broad 2010-11-05 NH-A_CTCF               | displayed | 
| 2897 | Broad 2010-11-05 NH-A_H3K27ac            | displayed | 
| 2898 | Broad 2010-11-05 NH-A_H3K27me3           | displayed | 
| 2899 | Broad 2010-11-05 NH-A_H3K36me3           | displayed | 
| 2900 | Broad 2010-11-05 NH-A_H3K4me1            | displayed | 
| 2901 | Broad 2010-11-05 NH-A_H3K4me3            | displayed | 
| 2902 | Broad 2010-11-05 NH-A_WCE                | displayed | 
| 2903 | Broad 2010-11-05 NHEK_CTCF               | displayed | 
| 2904 | Broad 2010-11-05 NHEK_H3K27ac            | displayed | 
| 2905 | Broad 2010-11-05 NHEK_H3K27me3           | displayed | 
| 2906 | Broad 2010-11-05 NHEK_H3K36me3           | displayed | 
| 2907 | Broad 2010-11-05 NHEK_H3K4me1            | displayed | 
| 2908 | Broad 2010-11-05 NHEK_H3K4me2            | displayed | 
| 2909 | Broad 2010-11-05 NHEK_H3K4me3            | displayed | 
| 2910 | Broad 2010-11-05 NHEK_H3K9ac             | displayed | 
| 2911 | Broad 2010-11-05 NHEK_H3K9me1            | displayed | 
| 2912 | Broad 2010-11-05 NHEK_H4K20me1           | displayed | 
| 2913 | Broad 2010-11-05 NHEK_RNA-pol2           | displayed | 
| 2914 | Broad 2010-11-05 NHEK_WCE                | displayed | 
| 2915 | Broad 2010-11-05 NHLF_CTCF               | displayed | 
| 2916 | Broad 2010-11-05 NHLF_H3K27ac            | displayed | 
| 2917 | Broad 2010-11-05 NHLF_H3K27me3           | displayed | 
| 2918 | Broad 2010-11-05 NHLF_H3K36me3           | displayed | 
| 2919 | Broad 2010-11-05 NHLF_H3K4me1            | displayed | 
| 2920 | Broad 2010-11-05 NHLF_H3K4me2            | displayed | 
| 2921 | Broad 2010-11-05 NHLF_H3K4me3            | displayed | 
| 2922 | Broad 2010-11-05 NHLF_H3K9ac             | displayed | 
| 2923 | Broad 2010-11-05 NHLF_H4K20me1           | displayed | 
| 2924 | Broad 2010-11-05 NHLF_WCE                | displayed | 
| 2969 | Broad 2010-11-12 HepG2_H3K27me3          | displayed | 
| 2970 | Broad 2010-11-12 Huvec_H3K36me3          | displayed | 
| 2978 | Broad 2010-11-12 GM12878_H2A.Z           | displayed | 
| 2979 | Broad 2010-11-12 GM12878_H3K79me2        | displayed | 
| 2980 | Broad 2010-11-12 GM12878_H3K9me3         | displayed | 
| 2981 | Broad 2010-11-12 HSMM_H2A.Z              | displayed | 
| 2982 | Broad 2010-11-12 HeLaS3_H3K27me3         | displayed | 
| 2983 | Broad 2010-11-12 K562_H2A.Z              | displayed | 
| 2984 | Broad 2010-11-12 K562_H3K79me2           | displayed | 
| 2985 | Broad 2010-11-12 K562_H3K9me3            | displayed | 
| 2986 | Broad 2010-11-12 NH-Osteoblast_CTCF      | displayed | 
| 2987 | Broad 2010-11-12 NH-Osteoblast_H2A.Z     | displayed | 
| 2988 | Broad 2010-11-12 NH-Osteoblast_H3K27ac   | displayed | 
| 2989 | Broad 2010-11-12 NH-Osteoblast_H3K36me3  | displayed | 
| 2990 | Broad 2010-11-12 NH-Osteoblast_H3K4me1   | displayed | 
| 2991 | Broad 2010-11-12 NH-Osteoblast_H3K4me2   | displayed | 
| 2992 | Broad 2010-11-12 NH-Osteoblast_H3K9me3   | displayed | 
| 3006 | Broad 2010-11-19 NHDF_CTCF               | displayed | 
| 3007 | Broad 2010-11-19 NHDF_H3K27ac            | displayed | 
| 3008 | Broad 2010-11-19 NHDF_H3K27me3           | displayed | 
| 3009 | Broad 2010-11-19 NHDF_H3K36me3           | displayed | 
| 3010 | Broad 2010-11-19 NHDF_H3K4me2            | displayed | 
| 3011 | Broad 2010-11-19 NHDF_H3K4me3            | displayed | 
| 3012 | Broad 2010-11-19 NHDF_H3K9ac             | displayed | 
| 3073 | Broad 2010-12-06 NH-Osteoblast_WCE       | displayed | 
| 3074 | Broad 2010-12-06 NHDF_WCE                | displayed | 
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2011-02-16 Testing experimentify
================================
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp
Using table named 'hg19.metaDb_tdreszer'.
There are no experiment defining variables defined for this composite.  Add them to obj wgEncodeBroadHistone => var:expVars.
0 of 930 objs can have their experiment IDs updated now.
objects:930  vars:19224

# Currently dependent upon a "composite" type mdb obj wgEncodeBroadHistone => expVar:"grant,lab,dataType,cell,antibody"
mdbPrint hg19 -vars="objType=composite"        
Using table named 'hg19.metaDb_tdreszer'.
metaObject wgEncodeCshlShortRnaSeq
objType composite
composite wgEncodeCshlShortRnaSeq
geoSeriesAccession GSE24565

mdbUpdate hg19 -obj=wgEncodeBroadHistone -setVars="objType=composite composite=wgEncodeBroadHistone expVars=grant,lab,dataType,cell,antibody" -test        
mdbUpdate hg19 -obj=wgEncodeBroadHistone -setVars="objType=composite composite=wgEncodeBroadHistone expVars=grant,lab,dataType,cell,antibody"              
Using table named 'hg19.metaDb_tdreszer'.
Affected 3 row(s) in hg19.metaDb_tdreszer

~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp
Experiment [EDV='grant'] there is no experiment defined in hgFixed.encodeExp table.

~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp
Composite 'wgEncodeBroadHistone' has expVars:'grant lab dataType cell antibody' with 5 EDVs.
Experiment 'grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 ' has 6 objects based upon 5 EDVs.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='grant=Bernstein lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.

~/bin/x86_64/mdbUpdate hg19 -composite=wgEncodeBroadHistone -encodeExp -test
Object 'wgEncodeBroadHistone' has no composite defined.
No Experiment ID updates were discovered in 931 object(s).

mdbPrint hg19 -composite=wgEncodeBroadHistone -vars="objType=composite"
Using table named 'hg19.metaDb_tdreszer'.
metaObject wgEncodeBroadHistone
objType composite
composite wgEncodeBroadHistone
expVars grant,lab,dataType,cell,antibody

~/bin/x86_64/mdbUpdate hg19 -vars="composite=wgEncodeBroadHistone" -encodeExp -test
Using table named 'hg19.metaDb_tdreszer'.
Found 930 of 930 object(s) would have their experiment ID updated.
Command would affected 1860 row(s) in hg19.metaDb_tdreszer

# Agreed with Kate to drop grant from expVars
mdbUpdate hg19 -obj=wgEncodeBroadHistone -setVars="objType=composite composite=wgEncodeBroadHistone expVars=lab,dataType,cell,antibody"
Affected 3 row(s) in hg19.metaDb_tdreszer

~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp > tmp.txt
Composite 'wgEncodeBroadHistone' has expVars:'lab dataType cell antibody' with 4 EDVs.
Experiment 'lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 ' has 6 objects based upon 4 EDVs.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.
Experiment 0 [EDV='lab=Broad dataType=ChipSeq cell=Osteobl antibody=H3K9me3 '] needs 'expId' to be set into the mdb.

~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp > tmp.txt
Found 930 of 930 object(s) would have their experiment ID updated.
Command would affected 1860 row(s) in hg19.metaDb_tdreszer

mdbUpdate hg19 -obj=wgEncodeBroadHistone -setVars="objType=composite composite=wgEncodeBroadHistone expVars=lab,dataType,cell,antibody"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeBroadHistone -encodeExp | tail
Composite 'wgEncodeBroadHistone' has 151 experiments currently defined. Largest:8  average:6.158940

mdbUpdate hg18 -obj=wgEncodeBroadChipSeq -setVars="objType=composite composite=wgEncodeBroadChipSeq expVars=lab,dataType,cell,antibody"              
~/bin/x86_64/mdbPrint hg18 -composite=wgEncodeBroadChipSeq -encodeExp | tail
Composite 'wgEncodeBroadChipSeq' has 93 experiments currently defined. Largest:6  average:5.903226

## Test Haib which has a mess of experiments
mdbUpdate hg19 -obj=wgEncodeHaibTfbs -setVars="objType=composite composite=wgEncodeHaibTfbs expVars=lab,dataType,cell,treatment,antibody,protocol" -test        
mdbUpdate hg19 -obj=wgEncodeHaibTfbs -setVars="objType=composite composite=wgEncodeHaibTfbs expVars=lab,dataType,cell,treatment,antibody,protocol"              
Using table named 'hg19.metaDb_tdreszer'.
Affected 3 row(s) in hg19.metaDb_tdreszer

~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeHaibTfbs -encodeExp | tail
Composite 'wgEncodeHaibTfbs' has 252 experiments currently defined. Largest:14  average:6.257937

mdbUpdate hg19 -obj=wgEncodeSydhTfbs -setVars="objType=composite composite=wgEncodeSydhTfbs expVars=lab,dataType,cell,treatment,antibody"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeSydhTfbs -encodeExp | tail
Composite 'wgEncodeSydhTfbs' has 375 experiments currently defined. Largest:19  average:4.272000


mdbUpdate hg19 -obj=wgEncodeOpenChromChip -setVars="objType=composite composite=wgEncodeOpenChromChip expVars=lab,dataType,cell,treatment,antibody"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromChip -encodeExp | tail
Composite 'wgEncodeOpenChromChip' has 46 experiments currently defined. Largest:9  average:5.891304

mdbUpdate hg19 -obj=wgEncodeOpenChromDnase -setVars="objType=composite composite=wgEncodeOpenChromDnase expVars=lab,dataType,cell,treatment"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromDnase -encodeExp | tail
Composite 'wgEncodeOpenChromDnase' has 47 experiments currently defined. Largest:13  average:6.936170
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromDnase -encodeExp
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromDnase -var=dataVersion -val="ENCODE Jan 2011%" -encodeExp

mdbUpdate hg19 -obj=wgEncodeOpenChromFaire -setVars="objType=composite composite=wgEncodeOpenChromFaire expVars=lab,dataType,cell,treatment"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromFaire -encodeExp | tail
Composite 'wgEncodeOpenChromFaire' has 26 experiments currently defined. Largest:9  average:6.884615

mdbUpdate hg19 -obj=wgEncodeOpenChromSynth -setVars="objType=composite composite=wgEncodeOpenChromSynth expVars=lab,dataType,cell"              
~/bin/x86_64/mdbPrint hg19 -composite=wgEncodeOpenChromSynth -encodeExp | tail
Composite 'wgEncodeOpenChromSynth' has 7 experiments currently defined. Largest:1  average:1.000000


2011-03-15 Liftover hg18 Broad HMM?
===================================
### Change color in bed files:
rm   wgEncodeBroadHmmGm12878HMM.bed
zcat wgEncodeBroadHmmGm12878HMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmGm12878HMM.bed
zcat wgEncodeBroadHmmGm12878HMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmGm12878HMM.bed
wl   wgEncodeBroadHmmGm12878HMM.bed         570580
zcat wgEncodeBroadHmmGm12878HMM.bed.gz | wl 570580

rm   wgEncodeBroadHmmH1hescHMM.bed
zcat wgEncodeBroadHmmH1hescHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmH1hescHMM.bed
zcat wgEncodeBroadHmmH1hescHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmH1hescHMM.bed
wl   wgEncodeBroadHmmH1hescHMM.bed         618287
zcat wgEncodeBroadHmmH1hescHMM.bed.gz | wl 618287

rm   wgEncodeBroadHmmHepg2HMM.bed
zcat wgEncodeBroadHmmHepg2HMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmHepg2HMM.bed
zcat wgEncodeBroadHmmHepg2HMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmHepg2HMM.bed
wl   wgEncodeBroadHmmHepg2HMM.bed         545647
zcat wgEncodeBroadHmmHepg2HMM.bed.gz | wl 545647

rm   wgEncodeBroadHmmHmecHMM.bed
zcat wgEncodeBroadHmmHmecHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmHmecHMM.bed
zcat wgEncodeBroadHmmHmecHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmHmecHMM.bed
wl   wgEncodeBroadHmmHmecHMM.bed         608568
zcat wgEncodeBroadHmmHmecHMM.bed.gz | wl 608568

rm   wgEncodeBroadHmmHsmmHMM.bed
zcat wgEncodeBroadHmmHsmmHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmHsmmHMM.bed
zcat wgEncodeBroadHmmHsmmHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmHsmmHMM.bed
wl   wgEncodeBroadHmmHsmmHMM.bed         638307
zcat wgEncodeBroadHmmHsmmHMM.bed.gz | wl 638307

rm   wgEncodeBroadHmmHuvecHMM.bed
zcat wgEncodeBroadHmmHuvecHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmHuvecHMM.bed
zcat wgEncodeBroadHmmHuvecHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmHuvecHMM.bed
wl   wgEncodeBroadHmmHuvecHMM.bed         549178
zcat wgEncodeBroadHmmHuvecHMM.bed.gz | wl 549178

rm   wgEncodeBroadHmmK562HMM.bed
zcat wgEncodeBroadHmmK562HMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmK562HMM.bed
zcat wgEncodeBroadHmmK562HMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmK562HMM.bed
wl   wgEncodeBroadHmmK562HMM.bed         621678
zcat wgEncodeBroadHmmK562HMM.bed.gz | wl 621678

rm   wgEncodeBroadHmmNhekHMM.bed
zcat wgEncodeBroadHmmNhekHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmNhekHMM.bed
zcat wgEncodeBroadHmmNhekHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmNhekHMM.bed
wl   wgEncodeBroadHmmNhekHMM.bed         627623
zcat wgEncodeBroadHmmNhekHMM.bed.gz | wl 627623

rm   wgEncodeBroadHmmNhlfHMM.bed
zcat wgEncodeBroadHmmNhlfHMM.bed.gz | grep    255,255,255 | sed -e 's/\t255,255,255/\t245,245,245/' >> wgEncodeBroadHmmNhlfHMM.bed
zcat wgEncodeBroadHmmNhlfHMM.bed.gz | grep -v 255,255,255                                           >> wgEncodeBroadHmmNhlfHMM.bed
wl   wgEncodeBroadHmmNhlfHMM.bed         640298
zcat wgEncodeBroadHmmNhlfHMM.bed.gz | wl 640298

sort < wgEncodeBroadHmmGm12878HMM.bed > s_wgEncodeBroadHmmGm12878HMM.bed
sort < wgEncodeBroadHmmH1hescHMM.bed  > s_wgEncodeBroadHmmH1hescHMM.bed
sort < wgEncodeBroadHmmHepg2HMM.bed   > s_wgEncodeBroadHmmHepg2HMM.bed
sort < wgEncodeBroadHmmHmecHMM.bed    > s_wgEncodeBroadHmmHmecHMM.bed
sort < wgEncodeBroadHmmHsmmHMM.bed    > s_wgEncodeBroadHmmHsmmHMM.bed
sort < wgEncodeBroadHmmHuvecHMM.bed   > s_wgEncodeBroadHmmHuvecHMM.bed
sort < wgEncodeBroadHmmK562HMM.bed    > s_wgEncodeBroadHmmK562HMM.bed
sort < wgEncodeBroadHmmNhekHMM.bed    > s_wgEncodeBroadHmmNhekHMM.bed
sort < wgEncodeBroadHmmNhlfHMM.bed    > s_wgEncodeBroadHmmNhlfHMM.bed

mv s_wgEncodeBroadHmmGm12878HMM.bed wgEncodeBroadHmmGm12878HMM.bed
mv s_wgEncodeBroadHmmH1hescHMM.bed  wgEncodeBroadHmmH1hescHMM.bed
mv s_wgEncodeBroadHmmHepg2HMM.bed   wgEncodeBroadHmmHepg2HMM.bed
mv s_wgEncodeBroadHmmHmecHMM.bed    wgEncodeBroadHmmHmecHMM.bed
mv s_wgEncodeBroadHmmHsmmHMM.bed    wgEncodeBroadHmmHsmmHMM.bed
mv s_wgEncodeBroadHmmHuvecHMM.bed   wgEncodeBroadHmmHuvecHMM.bed
mv s_wgEncodeBroadHmmK562HMM.bed    wgEncodeBroadHmmK562HMM.bed
mv s_wgEncodeBroadHmmNhekHMM.bed    wgEncodeBroadHmmNhekHMM.bed
mv s_wgEncodeBroadHmmNhlfHMM.bed    wgEncodeBroadHmmNhlfHMM.bed

mkdir obsolete/white
mv wgEncodeBroadHmmGm12878HMM.bed.gz obsolete/white
mv wgEncodeBroadHmmH1hescHMM.bed.gz obsolete/white
mv wgEncodeBroadHmmHepg2HMM.bed.gz obsolete/white
mv wgEncodeBroadHmmHmecHMM.bed.gz obsolete/white
mv wgEncodeBroadHmmHsmmHMM.bed.gz obsolete/white
mv wgEncodeBroadHmmHuvecHMM.bed.gz obsolete/white
mv wgEncodeBroadHmmK562HMM.bed.gz obsolete/white
mv wgEncodeBroadHmmNhekHMM.bed.gz obsolete/white
mv wgEncodeBroadHmmNhlfHMM.bed.gz obsolete/white

gzip wgEncodeBroadHmmGm12878HMM.bed
gzip wgEncodeBroadHmmH1hescHMM.bed
gzip wgEncodeBroadHmmHepg2HMM.bed
gzip wgEncodeBroadHmmHmecHMM.bed
gzip wgEncodeBroadHmmHsmmHMM.bed
gzip wgEncodeBroadHmmHuvecHMM.bed
gzip wgEncodeBroadHmmK562HMM.bed
gzip wgEncodeBroadHmmNhekHMM.bed
gzip wgEncodeBroadHmmNhlfHMM.bed

encodeDownloadsPage.pl -checksum index.html
cd release1/
rm *.gz
ln ../*.gz .
cp ../index.html .
cp ../files.txt .
cp ../md5sum.txt .

mkdir hg19
liftOver wgEncodeBroadHmmGm12878HMM.bed.gz -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmGm12878HMM.bed hg19/wgEncodeBroadHmmGm12878HMM.unmpped.bed
liftOver wgEncodeBroadHmmH1hescHMM.bed.gz  -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmH1hescHMM.bed  hg19/wgEncodeBroadHmmH1hescHMM.unmpped.bed
liftOver wgEncodeBroadHmmHepg2HMM.bed.gz   -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmHepg2HMM.bed   hg19/wgEncodeBroadHmmHepg2HMM.unmpped.bed
liftOver wgEncodeBroadHmmHmecHMM.bed.gz    -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmHmecHMM.bed    hg19/wgEncodeBroadHmmHmecHMM.unmpped.bed
liftOver wgEncodeBroadHmmHsmmHMM.bed.gz    -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmHsmmHMM.bed    hg19/wgEncodeBroadHmmHsmmHMM.unmpped.bed
liftOver wgEncodeBroadHmmHuvecHMM.bed.gz   -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmHuvecHMM.bed   hg19/wgEncodeBroadHmmHuvecHMM.unmpped.bed
liftOver wgEncodeBroadHmmK562HMM.bed.gz    -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmK562HMM.bed    hg19/wgEncodeBroadHmmK562HMM.unmpped.bed
liftOver wgEncodeBroadHmmNhekHMM.bed.gz    -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmNhekHMM.bed    hg19/wgEncodeBroadHmmNhekHMM.unmpped.bed
liftOver wgEncodeBroadHmmNhlfHMM.bed.gz    -bedPlus=6 -tab /hive/data/genomes/hg18/bed/liftOver/hg18ToHg19.over.chain.gz hg19/wgEncodeBroadHmmNhlfHMM.bed    hg19/wgEncodeBroadHmmNhlfHMM.unmpped.bed

cd hg19
cp {pip}/3446/broadHmm.d?f . # Use hg18 submission as template for hg19 submission
e *.d?f # change to hg19 and set all the files
tar -czf hg19BroadHmm.tgz *.bed *.d?f

## Too bad tjhe load doesn't work, since it needs -tab
Argument "Repetitive/CNV" isn't numeric in numeric gt (>) at /hive/groups/encode/dcc/pipeline/bin/doEncodeValida
te.pl line 510, <GEN0> line 1.

/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmGm12878 wgEncodeBroadHmmGm12878HMM.bed -tmpDir=/data/tmp/ -noSort -tab > tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmH1hesc  wgEncodeBroadHmmH1hescHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmHepg2   wgEncodeBroadHmmHepg2HMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmHmec    wgEncodeBroadHmmHmecHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmHsmm    wgEncodeBroadHmmHsmmHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmHuvec   wgEncodeBroadHmmHuvecHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmK562    wgEncodeBroadHmmK562HMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmNhek    wgEncodeBroadHmmNhekHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1 
/cluster/bin/x86_64/hgLoadBed -noNameIx hg19 wgEncodeBroadHmmNhlf    wgEncodeBroadHmmNhlfHMM.bed -tmpDir=/data/tmp/ -noSort -tab >> tryLoad.txt 2>&1
# use hgsql to verify tables
doEncodeValidate.pl -skipValidateFiles x ../3823 > validate_error
cd out
e mdb.txt trackDb.ra # edit names
cp trackDb.ra ~/kent/src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra
mdbUpdate hg19 mdb.txt -test
0 invalids of 144 variables according to the cv.ra.
mdbUpdate hg19 mdb.txt
Read 9 metadata objects from hg19
Affected 144 row(s) in hg19.metaDb_tdreszer
cd {metaDb19}
mdbPrint hg19 -composite=wgEncodeBroadHmm > wgEncodeBroadHmm.ra
e makefile # add in wgEncodeBroadHmm.ra
cd ../..
e trackDb.wgEncode.ra # add in wgEncodeBroadHmm.ra alpha
cp ../hg18/wgEncodeBroadHmm.html . 
e wgEncodeBroadHmm.html  

cd {down19}
mkdir wgEncodeBroadHmm
cd wgEncodeBroadHmm
mv /usr/local/apache/htdocs-hgdownload/goldenPath/hg18/encodeDCC/wgEncodeBroadHmm/hg19 .
mv *.bed ../
mv mv unmapped/ ../liftOverFromHg18Unmapped
cd ..
mv wgEncodeBroadHmmGm12878HMM.bed wgEncodeBroadHmmGm12878.bed
mv wgEncodeBroadHmmH1hescHMM.bed  wgEncodeBroadHmmH1hesc.bed
mv wgEncodeBroadHmmHepg2HMM.bed   wgEncodeBroadHmmHepg2.bed
mv wgEncodeBroadHmmHmecHMM.bed    wgEncodeBroadHmmHmec.bed
mv wgEncodeBroadHmmHsmmHMM.bed    wgEncodeBroadHmmHsmm.bed
mv wgEncodeBroadHmmHuvecHMM.bed   wgEncodeBroadHmmHuvec.bed
mv wgEncodeBroadHmmK562HMM.bed    wgEncodeBroadHmmK562.bed
mv wgEncodeBroadHmmNhekHMM.bed    wgEncodeBroadHmmNhek.bed
mv wgEncodeBroadHmmNhlfHMM.bed    wgEncodeBroadHmmNhlf.bed

gzip wgEncodeBroadHmmGm12878.bed
gzip wgEncodeBroadHmmH1hesc.bed
gzip wgEncodeBroadHmmHepg2.bed
gzip wgEncodeBroadHmmHmec.bed
gzip wgEncodeBroadHmmHsmm.bed
gzip wgEncodeBroadHmmHuvec.bed
gzip wgEncodeBroadHmmK562.bed
gzip wgEncodeBroadHmmNhek.bed
gzip wgEncodeBroadHmmNhlf.bed

# Jason Ernst still intends to do his own liftOver.

2011-03-18 Late changing statuses
=================================
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1680 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1683 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1684 released
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/cluster/data/encode/pipeline/bin/encodeStatus.pl 3074 released

2011-03-28 Broad HMM (lift over from hg18)
==========================================
Jason submitted
3823
After manipulating the DAF, got this loaded.
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3823 displayed
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3823 approved
cd {downhg19}/wgEncodeBroadHmm
mkdir release1
ln -sf release1/ releaseLatest
ln -sf release1/ beta
cp index.html release1/
cp files.txt release1/
cp md5sum.txt release1/
cd release1/
ln ../*.gz .
cd ..
~/bin/scripts/encodeMkChangeNotes hg19 release1 - > release1/wgEncodeBroadHmm.release1.notes
mv release1/wgEncodeBroadHmm.release1.notes ~/kent/src/hg/makeDb/doc/encodeDccHg19/
cd ~/kent/src/hg/makeDb/doc/encodeDccHg19/
e wgEncodeBroadHmm.release1.notes # make sure it looks okay

# standardized liftOver message in description.
# added to pushQ

2011-04-20 Experimentify
========================
cd trackDb/human/hg19/metaDb/alpha
mdbPrint hg19 -composite=%BroadHist% -experimentify > tmp.txt

mdbUpdate hg19 -composite=%BroadHist% -encodeExp=std -test     
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHistone' has 151 recognizable experiments with 151 missing an expId.
   objects/experiment: min:3  max:8  mean:6.158940.
Found 930 of 931 object(s) would have their experiment ID updated.
mdbUpdate hg19 -composite=%BroadHist% -encodeExp=std      
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHistone' has 151 recognizable experiments with 151 missing an expId.
   objects/experiment: min:3  max:8  mean:6.158940.
Affected 1470 row(s) in hg19.metaDb_tdreszer

mdbUpdate hg19 -composite=%BroadHist% -encodeExp=std -accession
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHistone' has 151 recognizable experiments with 0 missing an expId.
   objects/experiment: min:3  max:8  mean:6.158940.
Affected 390 row(s) in hg19.metaDb_tdreszer

mdbPrint hg19 -composite=wgEncodeBroadHistone > wgEncodeBroadHistone.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:931  vars:21087

gold, gadd, gci, gup,gpush

mdbPrint hg19 -composite=%BroadHmm -experimentify > tmp.txt
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
objects:10  vars:147

mdbUpdate hg19 -composite=%BroadHmm -encodeExp=std -test               
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHmm' has 9 recognizable experiments with 9 missing an expId.
   objects/experiment: min:1  max:1  mean:1.000000.
Found 9 of 10 object(s) would have their experiment ID updated.
Command would affected 18 row(s) in hg19.metaDb_tdreszer

mdbUpdate hg19 -composite=%BroadHmm -encodeExp=std
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHmm' has 9 recognizable experiments with 9 missing an expId.
   objects/experiment: min:1  max:1  mean:1.000000.
Affected 18 row(s) in hg19.metaDb_tdreszer

mdbUpdate hg19 -composite=%BroadHmm -encodeExp=std -accession -test
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHmm' has 9 recognizable experiments with 0 missing an expId.
   objects/experiment: min:1  max:1  mean:1.000000.
No Experiment ID updates were discovered in 10 object(s).
Command would affected 0 row(s) in hg19.metaDb_tdreszer

mdbUpdate hg19 -composite=%BroadHmm -encodeExp=std -accession
Using hgFixed.encodeExp
Using table named 'hg19.metaDb_tdreszer'.
Composite 'wgEncodeBroadHmm' has 9 recognizable experiments with 0 missing an expId.
   objects/experiment: min:1  max:1  mean:1.000000.
No Experiment ID updates were discovered in 10 object(s).
Affected 0 row(s) in hg19.metaDb_tdreszer

mdbPrint hg19 -composite=wgEncodeBroadHmm > wgEncodeBroadHmm.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:10  vars:165

gold wgEncodeBroadHmm.ra

gold, gadd, gci, gup,gpush

cd {downloads}/wgEncodeBroadHistone
encodeDownloadsPage.pl -db=hg19 index.html

cd {downloads}/wgEncodeBroadHmm
encodeDownloadsPage.pl -db=hg19 index.html
cp index.html release1/
cp files.txt release1/

2011-06-14 Broad HMM is finally in QA
=====================================
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3446 reviewing
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3823 reviewing

2011-06-24 Broad HMM is finally released
========================================
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3446 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 3823 released

2011-06-27 Jim's Reg tracks now have broken links
==================================================
###### Needs to be fixed:
cd /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes/Homo_sapiens/encodeDCC/wgEncodeRegMarkH3k4me1
same as:
cd (d19)/wgEncodeRegMarkH3k4me1
wgEncodeBroadHistoneGm12878H3k4me1StdSig.bigWig -> ../wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k4me1StdSig.bigWig
ln ../wgEncodeBroadHistone/release1/wgEncodeBroadHistoneGm12878H3k4me1StdSig.bigWig wgEncodeBroadHistoneGm12878H3k4me1StdSig.bigWig

rm wgEncodeBroadHistoneH1hescH3k4me1StdSig.bigWig 
rm wgEncodeBroadHistoneHsmmH3k4me1StdSig.bigWig 
rm wgEncodeBroadHistoneHuvecH3k4me1StdSig.bigWig 
rm wgEncodeBroadHistoneK562H3k4me1StdSig.bigWig 
rm wgEncodeBroadHistoneNhekH3k4me1StdSig.bigWig 
rm wgEncodeBroadHistoneNhlfH3k4me1StdSig.bigWig 

ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneH1hescH3k4me1StdSig.bigWig wgEncodeBroadHistoneH1hescH3k4me1StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHsmmH3k4me1StdSig.bigWig wgEncodeBroadHistoneHsmmH3k4me1StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHuvecH3k4me1StdSig.bigWig wgEncodeBroadHistoneHuvecH3k4me1StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneK562H3k4me1StdSig.bigWig wgEncodeBroadHistoneK562H3k4me1StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhekH3k4me1StdSig.bigWig wgEncodeBroadHistoneNhekH3k4me1StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhlfH3k4me1StdSig.bigWig wgEncodeBroadHistoneNhlfH3k4me1StdSig.bigWig 


/usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes/Homo_sapiens/encodeDCC/wgEncodeRegMarkH3k4me3
cd (d19)/wgEncodeRegMarkH3k4me3
wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig -> ../wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig
ln ../wgEncodeBroadHistone/release1/wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig wgEncodeBroadHistoneGm12878H3k4me3StdSig.bigWig
### Answer: convert all reg download dirs to hold hard links!

rm wgEncodeBroadHistoneH1hescH3k4me3StdSig.bigWig
rm wgEncodeBroadHistoneHsmmH3k4me3StdSig.bigWig 
rm wgEncodeBroadHistoneHuvecH3k4me3StdSig.bigWig 
rm wgEncodeBroadHistoneK562H3k4me3StdSig.bigWig 
rm wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig 
rm wgEncodeBroadHistoneNhlfH3k4me3StdSig.bigWig 

ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneH1hescH3k4me3StdSig.bigWig wgEncodeBroadHistoneH1hescH3k4me3StdSig.bigWig
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHsmmH3k4me3StdSig.bigWig wgEncodeBroadHistoneHsmmH3k4me3StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHuvecH3k4me3StdSig.bigWig wgEncodeBroadHistoneHuvecH3k4me3StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneK562H3k4me3StdSig.bigWig wgEncodeBroadHistoneK562H3k4me3StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig wgEncodeBroadHistoneNhekH3k4me3StdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhlfH3k4me3StdSig.bigWig wgEncodeBroadHistoneNhlfH3k4me3StdSig.bigWig 

cd ../wgEncodeRegMarkH3k27ac/
rm wgEncodeBroadHistoneGm12878H3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneH1hescH3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneHsmmH3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneHuvecH3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneK562H3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneNhekH3k27acStdSig.bigWig 
rm wgEncodeBroadHistoneNhlfH3k27acStdSig.bigWig 

ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k27acStdSig.bigWig wgEncodeBroadHistoneGm12878H3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneH1hescH3k27acStdSig.bigWig wgEncodeBroadHistoneH1hescH3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHsmmH3k27acStdSig.bigWig wgEncodeBroadHistoneHsmmH3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneHuvecH3k27acStdSig.bigWig wgEncodeBroadHistoneHuvecH3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneK562H3k27acStdSig.bigWig wgEncodeBroadHistoneK562H3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhekH3k27acStdSig.bigWig wgEncodeBroadHistoneNhekH3k27acStdSig.bigWig 
ln ../wgEncodeBroadHistone/wgEncodeBroadHistoneNhlfH3k27acStdSig.bigWig wgEncodeBroadHistoneNhlfH3k27acStdSig.bigWig 

