## Quality by Cycle

Per-cycle quality score. Reported quality scores are `calibrated', i.e., incorporating phred-like adjustments following sequence alignment. These typically decline with cycle, in an accelerating manner. Abrupt transitions in quality between cycles toward the end of the read might result when only some of the cycles are used for alignment: the cycles included in the alignment are calibrated more effectively than the reads excluded from the alignment.

The reddish lines are quartiles (solid: median, dotted: 25, 75), the green line is the mean. Shading is proporitional to number of reads.

@CYCLE_QUALITY@