The mcx clcf manual
Keywords: manual

4 Nov 2009 mcx clcf 1.008, 09-308

1.
NAME
2.
SYNOPSIS
3.
DESCRIPTION
4.
OPTIONS
5.
SEE ALSO

## NAME

mcx clcf — compute the clustering coefficient of a graph

## SYNOPSIS

mcx clcf [options] [matrix-file]

mcxclcf is not in actual fact a program. This manual page documents the behaviour and options of the mcx program when invoked in mode clcf. The options -h, --apropos, --version, -set, --nop, -progress <num> are accessible in all mcx modes. They are described in the mcx manual page.

mcx clcf [-abc <fname> (specify label input)] [-imx <fname> (specify matrix input)] [-tab <fname> (use tab file)] [--list (list clustering coefficient for all nodes)] [-h (print synopsis, exit)] [--apropos (print synopsis, exit)] [--version (print version, exit)]

## DESCRIPTION

mcx clcf computes the clustering coefficient of a graph.

The input graph/matrix, if specified with the -imx option, has to be in mcl matrix/graph format. You can use label input instead by using the -abc option. Refer to mcxio for a description of these two input formats. By default mcx diameter reads from STDIN and expects matrix format. To specify label input from STDIN use -abc -.

## OPTIONS

-abc <fname> (label input)

The file name for input that is in label format.

-imx <fname> (input matrix)

The file name for input. STDIN is assumed if not specified.

-tab <fname> (use tab file)

This option causes the output to be printed with the labels found in the tab file. With -abc this option will, additionally, construct a graph only on the labels found in the tab file. If this option is used in conjunction with -imx the tab domain and the matrix domain are required to be identical.

--list (print result for each node)

Print clustering coefficient for all nodes.

## SEE ALSO

mcxio, and mclfamily for an overview of all the documentation and the utilities in the mcl family.