F_1_panel.pairs {lattice} | R Documentation

## Default Superpanel Function for splom

### Description

This is the default superpanel function for `splom`.

### Usage

    panel.pairs(z,
                panel = lattice.getOption("panel.splom"),
                lower.panel = panel,
                upper.panel = panel,
                diag.panel = "diag.panel.splom",
                as.matrix = FALSE,
                groups = NULL,
                panel.subscripts,
                subscripts,
                pscales = 5,
                prepanel.limits = scale.limits,
                varnames = colnames(z),
                varname.col, varname.cex, varname.font,
                varname.fontfamily, varname.fontface,
                axis.text.col, axis.text.cex, axis.text.font,
                axis.text.fontfamily, axis.text.fontface,
                axis.text.lineheight,
                axis.line.col, axis.line.lty, axis.line.lwd,
                axis.line.alpha, axis.line.tck,
                ...)
    diag.panel.splom(x = NULL,
                     varname = NULL, limits, at = NULL, labels = NULL,
                     draw = TRUE, tick.number = 5,
                     varname.col, varname.cex,
                     varname.lineheight, varname.font,
                     varname.fontfamily, varname.fontface,
                     axis.text.col, axis.text.alpha,
                     axis.text.cex, axis.text.font,
                     axis.text.fontfamily, axis.text.fontface,
                     axis.text.lineheight,
                     axis.line.col, axis.line.alpha,
                     axis.line.lty, axis.line.lwd,
                     axis.line.tck,
                     ...)

### Arguments

`z` | The data frame used for the plot.

`panel, lower.panel, upper.panel`

The panel function used to display each pair of variables. If specified, `lower.panel` and `upper.panel` are used for panels below and above the diagonal respectively.

In addition to extra arguments not recognized by `panel.pairs`, the list of arguments passed to the panel function also includes arguments named `i` and `j`, with values indicating the row and column of the scatterplot matrix being plotted.

`diag.panel` | The panel function used for the diagonals. See arguments to `diag.panel.splom` to know what arguments this function is passed when called.
`as.matrix` | logical. If `TRUE`, the layout of the panels will have origin on the top left instead of bottom left (similar to `pairs`). This is in essence the same functionality as provided by `as.table` for the panel layout
`groups` | Grouping variable, if any
`panel.subscripts` | logical specifying whether the panel function accepts an argument named `subscripts`.
`subscripts` | The indices of the rows of `z` that are to be displayed in this (super)panel.

`pscales`

Controls axis labels, passed down from `splom`. If `pscales` is a single number, it indicates the approximate number of equally-spaced ticks that should appear on each axis. If `pscales` is a list, it should have one component for each column in `z`, each of which itself a list with the following valid components:

`at`: a numeric vector specifying tick locations

`labels`: character vector labels to go with at

`limits`: numeric 2-vector specifying axis limits (should be made more flexible at some point to handle factors)

These are specifications on a per-variable basis, and used on all four sides in the diagonal cells used for labelling. Factor variables are labelled with the factor names. Use `pscales=0` to supress the axes entirely.

`prepanel.limits`

A function to calculate suitable axis limits given a single argument `x` containing a data vector. The return value of the function should be similar to the `xlim` or `ylim` argument documented in `xyplot`; that is, it should be a numeric or DateTime vector of length 2 defining a range, or a character vector representing levels of a factor.

Most high-level lattice plots (such as `xyplot`) use the `prepanel` function for deciding on axis limits from data. This function serves a similar function by calculating the per-variable limits. These limits can be overridden by the corresponding `limits` component in the `pscales` list.

`x` | data vector corresponding to that row / column (which will be the same for diagonal ‘panels’).
`varname` | (scalar) character string or expression that is to be written centred within the panel
`limits` | numeric of length 2, or, vector of characters, specifying the scale for that panel (used to calculate tick locations when missing)
`at` | locations of tick marks
`labels` | optional labels for tick marks
`draw` | A logical flag specifying whether to draw the tick marks and labels. If `FALSE`, variable names are shown but axis annotation is omitted.
`tick.number` | A Numeric scalar giving the suggested number of tick marks.
`varnames` | A character or expression vector or giving names to be used for the variables in `x`. By default, the column names of `x`.
`varname.col` | Color for the variable name in each diagonal panel. See `gpar` for details on this and the other graphical parameters listed below.
`varname.cex` | Size multiplier for the variable name in each diagonal panel.
`varname.lineheight` | Line height for the variable name in each diagonal panel.
`varname.font, varname.fontfamily, varname.fontface` | Font specification for the variable name in each diagonal panel.
`axis.text.col` | Color for axis label text.
`axis.text.cex` | Size multiplier for axis label text.
`axis.text.font, axis.text.fontfamily, axis.text.fontface` | Font specification for axis label text.
`axis.text.lineheight` | Line height for axis label text.
`axis.text.alpha` | Alpha-transparency for axis label text.
`axis.line.col` | Color for the axes.
`axis.line.lty` | Line type for the axes.
`axis.line.lwd` | Line width for the axes.
`axis.line.alpha` | Alpha-transparency for the axes.
`axis.line.tck` | A numeric multiplier for the length of tick marks in diagonal panels.
`...` | Further arguments, passed on to `panel`, `lower.panel`, `upper.panel`, and `diag.panel` from `panel.pairs`. Currently ignored by `diag.panel.splom`.

### Details

`panel.pairs` is the function that is actually used as the panel function in a `"trellis"` object produced by `splom`.

### Author(s)

Deepayan Sarkar Deepayan.Sarkar@R-project.org

### See Also

`splom`

### Examples

    Cmat <- outer(1:6,1:6,
                  function(i,j) rainbow(11, start=.12, end=.5)[i+j-1])

    splom(~diag(6), as.matrix = TRUE,
          panel = function(x, y, i, j, ...) {
              panel.fill(Cmat[i,j])
              panel.text(.5,.5, paste("(",i,",",j,")",sep=""))
          })

[Package lattice version 0.20-6 Index]