EMBOSS

| PHYLOGENY DISCRETE CHARACTERS

Phylogenetic discrete character methods

Program name | Description
--- | ---
eclique | Largest clique program
edollop | Dollo and polymorphism parsimony algorithm
edolpenny | Penny algorithm Dollo or polymorphism
efactor | Multistate to binary recoding program
emix | Mixed parsimony algorithm
epenny | Penny algorithm, branch-and-bound
fclique | Largest clique program
fdollop | Dollo and polymorphism parsimony algorithm
fdolpenny | Penny algorithm Dollo or polymorphism
ffactor | Multistate to binary recoding program
fmix | Mixed parsimony algorithm
fmove | Interactive mixed method parsimony
fpars | Discrete character parsimony
fpenny | Penny algorithm, branch-and-bound