EMBOSS

| ALIGNMENT LOCAL

Local sequence alignment

Program name | Description
--- | ---
matcher | Waterman-Eggert local alignment of two sequences
seqmatchall | All-against-all word comparison of a sequence set
supermatcher | Calculate approximate local pair-wise alignments of larger sequences
water | Smith-Waterman local alignment of sequences
wordfinder | Match large sequences against one or more other sequences
wordmatch | Finds regions of identity (exact matches) of two sequences