org.biojava.bio.program.gff

Class GFFRecordFilter.SequenceFilter

java.lang.Object

org.biojava.bio.program.gff.GFFRecordFilter.SequenceFilter

All Implemented Interfaces:

GFFRecordFilter

Enclosing interface:

GFFRecordFilter

public static class GFFRecordFilter.SequenceFilter
extends java.lang.Object
implements GFFRecordFilter

Implementation of GFFRecordFilter that accepts records based upon the sequence name.

Author:

Matthew Pocock

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

ACCEPT_ALL

Constructor Summary

Constructors

Constructor and Description
GFFRecordFilter.SequenceFilter()
GFFRecordFilter.SequenceFilter(java.lang.String seqName)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	accept(GFFRecord record) Return whether or not to accept record.
java.lang.String	getSeqName() Retrieve the current sequence name.
void	setSeqName(java.lang.String seqName) Set the sequence name to seqName.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GFFRecordFilter.SequenceFilter

public GFFRecordFilter.SequenceFilter()

GFFRecordFilter.SequenceFilter

public GFFRecordFilter.SequenceFilter(java.lang.String seqName)

Method Detail

getSeqName

public java.lang.String getSeqName()

Retrieve the current sequence name.

Returns:

the sequence name String

setSeqName

public void setSeqName(java.lang.String seqName)

Set the sequence name to seqName.

Parameters:

seqName - the new sequence name to match

accept

public boolean accept(GFFRecord record)

Description copied from interface: GFFRecordFilter

Return whether or not to accept record.

Specified by:

accept in interface GFFRecordFilter

Parameters:

record - the GFFRecord to filter

Returns:

record. getSeqName() == this.getSeqName()