org.biojava.bio.seq.homol

Class SimilarityPairFeature.Template

java.lang.Object

org.biojava.bio.seq.Feature.Template

org.biojava.bio.seq.StrandedFeature.Template

org.biojava.bio.seq.homol.SimilarityPairFeature.Template

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

Enclosing interface:

SimilarityPairFeature

public static class SimilarityPairFeature.Template
extends StrandedFeature.Template

Template for construction of SimilarityPairFeatures.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
Alignment	alignment alignment Alignment field.
double	score score of the search which produced the alignment.
SimilarityPairFeature	sibling sibling SimilarityPairFeature field.

Fields inherited from class org.biojava.bio.seq.StrandedFeature.Template

strand

Fields inherited from class org.biojava.bio.seq.Feature.Template

annotation, location, source, sourceTerm, type, typeTerm

Constructor Summary

Constructors

Constructor and Description
SimilarityPairFeature.Template()

Method Summary

Methods inherited from class org.biojava.bio.seq.Feature.Template

clone, equals, hashCode, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

sibling

public SimilarityPairFeature sibling

sibling SimilarityPairFeature field. May be null if the reciprocal SimilarityPairFeature has not yet been created.

alignment

public Alignment alignment

alignment Alignment field.

score

public double score

score of the search which produced the alignment.

Constructor Detail

SimilarityPairFeature.Template

public SimilarityPairFeature.Template()