org.biojava.bio.seq.io.agave

Class AGAVEEvidenceHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXFeatureHandler

org.biojava.bio.seq.io.agave.AGAVEEvidenceHandler

All Implemented Interfaces:

AGAVEEvidenceCallbackItf, StAXContentHandler

public class AGAVEEvidenceHandler
extends StAXFeatureHandler
implements AGAVEEvidenceCallbackItf

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_EVIDENCE_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

Methods

Modifier and Type	Method and Description
void	addElementId(java.lang.String id)
void	endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler) Element specific exit handler Subclass to do anything useful.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_EVIDENCE_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_EVIDENCE_HANDLER_FACTORY

Method Detail

addElementId

public void addElementId(java.lang.String id)

Specified by:

addElementId in interface AGAVEEvidenceCallbackItf

endElementHandler

public void endElementHandler(java.lang.String nsURI,
                     java.lang.String localName,
                     java.lang.String qName,
                     StAXContentHandler handler)
                       throws org.xml.sax.SAXException

Description copied from class: StAXFeatureHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXFeatureHandler

Throws:

org.xml.sax.SAXException