org.biojavax.bio

Interface BioEntryIterator

All Known Subinterfaces:

RichSequenceIterator

All Known Implementing Classes:

HashedFastaIterator, RichSequence.IOTools.SingleRichSeqIterator, RichStreamReader

public interface BioEntryIterator

Essentially the same as SequenceIterator. It provides a new method that returns RichSequence objects without the need for explicit casting. Implementations of this interface should always return RichSequence objects for both the nextSequence() and nextRichSequence() methods.

Since:

1.5

Author:

Mark Schreiber, Richard Holland

See Also:

SequenceIterator

Method Summary

Methods

Modifier and Type	Method and Description
boolean	hasNext() Returns whether there are more sequences to iterate over.
BioEntry	nextBioEntry()

Method Detail

hasNext

boolean hasNext()

Returns whether there are more sequences to iterate over.

Returns:

true if there are more sequences to get and false otherwise

nextBioEntry

BioEntry nextBioEntry()
                      throws java.util.NoSuchElementException,
                             BioException

Throws:

java.util.NoSuchElementException

BioException