org.biojavax.bio.seq.io

Class UniProtLocationParser

java.lang.Object

org.biojavax.bio.seq.io.UniProtLocationParser

public class UniProtLocationParser
extends java.lang.Object

Parses UniProt location strings into RichLocation objects.

Since:

1.5

Author:

Richard Holland

Method Summary

Methods

Modifier and Type	Method and Description
static RichLocation	parseLocation(java.lang.String loc) Parses a location.
static java.lang.String	writeLocation(RichLocation l) Writes a location in UniProt format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

parseLocation

public static RichLocation parseLocation(java.lang.String loc)
                                  throws ParseException

Parses a location.

Parameters:

loc - the UniProt location string.

Returns:

RichLocation the equivalent RichLocation object.

Throws:

ParseException - if the parsing failed.

writeLocation

public static java.lang.String writeLocation(RichLocation l)

Writes a location in UniProt format.

Parameters:

l - the location to write

Returns:

the formatted string representing the location.