org.biojava.bio.program.das.dasalignment

Class DASAlignmentXMLResponseParser

java.lang.Object

org.xml.sax.helpers.DefaultHandler

org.biojava.bio.program.das.dasalignment.DASAlignmentXMLResponseParser

All Implemented Interfaces:

org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler

public class DASAlignmentXMLResponseParser
extends org.xml.sax.helpers.DefaultHandler

A class to Parse the XML response of a DAS Alignment service. returns an Alignment object.

Since:

1.4

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
DASAlignmentXMLResponseParser()

Method Summary

Modifier and Type	Method and Description
void	characters(char[] ch, int start, int length)
void	endDocument()
void	endElement(java.lang.String uri, java.lang.String name, java.lang.String qName)
Alignment	getAlignment(int position) Returns Alignment at position ...
Alignment[]	getAlignments() Returns the alignments.
void	startDocument()
void	startElement(java.lang.String uri, java.lang.String name, java.lang.String qName, org.xml.sax.Attributes atts)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DASAlignmentXMLResponseParser

public DASAlignmentXMLResponseParser()

Method Detail

getAlignments

public Alignment[] getAlignments()

Returns the alignments.

Returns:

an array of Alignment objects

getAlignment

public Alignment getAlignment(int position)

Returns Alignment at position ...

Parameters:

position - an int

Returns:

an Alignment object

startElement

public void startElement(java.lang.String uri,
                         java.lang.String name,
                         java.lang.String qName,
                         org.xml.sax.Attributes atts)

Specified by:

startElement in interface org.xml.sax.ContentHandler

Overrides:

startElement in class org.xml.sax.helpers.DefaultHandler

endElement

public void endElement(java.lang.String uri,
                       java.lang.String name,
                       java.lang.String qName)

Specified by:

endElement in interface org.xml.sax.ContentHandler

Overrides:

endElement in class org.xml.sax.helpers.DefaultHandler

startDocument

public void startDocument()

Specified by:

startDocument in interface org.xml.sax.ContentHandler

Overrides:

startDocument in class org.xml.sax.helpers.DefaultHandler

endDocument

public void endDocument()

Specified by:

endDocument in interface org.xml.sax.ContentHandler

Overrides:

endDocument in class org.xml.sax.helpers.DefaultHandler

characters

public void characters(char[] ch,
                       int start,
                       int length)

Specified by:

characters in interface org.xml.sax.ContentHandler

Overrides:

characters in class org.xml.sax.helpers.DefaultHandler