org.biojava.bio.program.das.dasstructure

Class DASStructureCall

java.lang.Object

org.biojava.bio.program.das.dasstructure.DASStructureCall

public class DASStructureCall
extends java.lang.Object

Calls a DAS - Structure server.

Since:

1.4

Version:

%I% %G%

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
DASStructureCall() Constructs a DASStructureCall object.
DASStructureCall(java.lang.String url) Constructs a DASStructureCall object.

Method Summary

Modifier and Type	Method and Description
java.lang.String	getServerurl() get url of structure service.
Structure	getStructure(java.lang.String pdb_code) connect to a DAS structure service and retreive 3D data.
protected java.lang.String	getTimeStamp() Returns a time stamp .
void	setServerurl(java.lang.String s) set url of structure service.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DASStructureCall

public DASStructureCall()

Constructs a DASStructureCall object.

DASStructureCall

public DASStructureCall(java.lang.String url)

Constructs a DASStructureCall object.

Parameters:

url - a String ...

Method Detail

getTimeStamp

protected java.lang.String getTimeStamp()

Returns a time stamp .

Returns:

a String representing the current system time

setServerurl

public void setServerurl(java.lang.String s)

set url of structure service.

Parameters:

s - a String specifying the serverurl value

See Also:

getServerurl()

getServerurl

public java.lang.String getServerurl()

get url of structure service.

Returns:

a Structure object

Throws:

java.io.IOException - ...

See Also:

setServerurl(java.lang.String)

getStructure

public Structure getStructure(java.lang.String pdb_code)
                       throws java.io.IOException

connect to a DAS structure service and retreive 3D data. return a biojava Structure object

Parameters:

pdb_code - a String

Returns:

a Structure object

Throws:

java.io.IOException - ...