Package org.biojava.bio.program.fastq

FASTQ and variants sequence format IO.

See: Description

Interface Summary

Interface	Description
FastqReader	Reader for FASTQ formatted sequences.
FastqWriter	Writer for FASTQ formatted sequences.

Class Summary

Class	Description
Fastq	FASTQ formatted sequence.
FastqBuilder	Fluent builder API for creating FASTQ formatted sequences.
IlluminaFastqReader	Reader for FastqVariant.FASTQ_ILLUMINA formatted sequences.
IlluminaFastqWriter	Writer for FastqVariant.FASTQ_ILLUMINA formatted sequences.
SangerFastqReader	Reader for FastqVariant.FASTQ_SANGER formatted sequences.
SangerFastqWriter	Writer for FastqVariant.FASTQ_SANGER formatted sequences.
SolexaFastqReader	Reader for FastqVariant.FASTQ_SOLEXA formatted sequences.
SolexaFastqWriter	Writer for FastqVariant.FASTQ_SOLEXA formatted sequences.

Enum Summary

Enum	Description
FastqVariant	FASTQ sequence format variant.

Package org.biojava.bio.program.fastq Description

FASTQ and variants sequence format IO.