org.biojava.bio.seq.io

Interface AlignmentFormat

All Known Implementing Classes:

FastaAlignmentFormat, MSFAlignmentFormat

public interface AlignmentFormat

Author:

Matthew Pocock, Samiul Hasan, Thomas Down, Keith James

Method Summary

Modifier and Type	Method and Description
Alignment	read(java.io.BufferedReader reader) Read in an alignment from a buffered reader object

Method Detail

read

Alignment read(java.io.BufferedReader reader)

Read in an alignment from a buffered reader object

Parameters:

reader - the reader from which to read in the alignment