Uses of Class
org.biojava.bio.alignment.SequenceAlignment

Packages that use SequenceAlignment

Package	Description
org.biojava.bio.alignment	Classes to generate and describe sequence alignments.

Uses of SequenceAlignment in org.biojava.bio.alignment

Subclasses of SequenceAlignment in org.biojava.bio.alignment

Modifier and Type	Class	Description
class	NeedlemanWunsch	Needleman and Wunsch defined the problem of global sequence alignments, from the first till the last symbol of a sequence.
class	SmithWaterman	Smith and Waterman developed an efficient dynamic programming algorithm to perform local sequence alignments, which returns the most conserved region of two sequences (longest common substring with modifications).