Uses of Class
org.biojava.bio.molbio.RestrictionEnzyme

Packages that use RestrictionEnzyme

Package	Description
org.biojava.bio.molbio	The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.

Uses of RestrictionEnzyme in org.biojava.bio.molbio

Fields in org.biojava.bio.molbio declared as RestrictionEnzyme

Modifier and Type	Field	Description
RestrictionEnzyme	RestrictionSite.Template.enzyme	enzyme RestrictionEnzyme field.

Methods in org.biojava.bio.molbio that return RestrictionEnzyme

Modifier and Type	Method	Description
static RestrictionEnzyme	RestrictionEnzymeManager.getEnzyme(java.lang.String name)	getEnzyme returns an enzyme by name.
RestrictionEnzyme	RestrictionSite.getEnzyme()	getEnzyme returns the enzyme which cuts at this site.

Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzyme

Modifier and Type	Method	Description
void	RestrictionMapper.addEnzyme(RestrictionEnzyme enzyme)	addEnzyme adds an enzyme to be searched for in the Sequence.
static Annotation	RestrictionEnzymeManager.getAnnotation(RestrictionEnzyme enzyme)	getAnnotation returns an immutable, static annotation describing the enzyme.
static java.util.regex.Pattern[]	RestrictionEnzymeManager.getPatterns(RestrictionEnzyme enzyme)	getPatterns returns two Pattern objects for an enzyme, one matches the forward strand and one the reverse.
static java.lang.String	RestrictionEnzymeManager.getSuppliers(RestrictionEnzyme enzyme)	getSuppliers returns a string describing the suppliers of this enzyme according to REBASE encoding for commercial sources or an empty String if the enzyme is not commecially available.
static void	RestrictionEnzymeManager.register(RestrictionEnzyme enzyme, java.util.Set isoschizomers)	register regisiters a new RestrictionEnzyme with the manager.
void	RestrictionMapper.removeEnzyme(RestrictionEnzyme enzyme)	removeEnzyme removes an enzyme from those to be searched for in the Sequence.

Uses of RestrictionEnzyme in org.biojava.bio.seq.impl

Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme

Modifier and Type	Method	Description
RestrictionEnzyme	SimpleRestrictionSite.getEnzyme()