Uses of Class
org.biojava.bio.program.das.dasalignment.Alignment

Packages that use Alignment

Package	Description
org.biojava.bio.program.das.dasalignment	request alignments via DAS

Uses of Alignment in org.biojava.bio.program.das.dasalignment

Methods in org.biojava.bio.program.das.dasalignment that return Alignment

Modifier and Type	Method	Description
Alignment	DASAlignmentXMLResponseParser.getAlignment(int position)	Returns Alignment at position ...
Alignment[]	DASAlignmentCall.getAlignments()	connect to a DAS alignment service and retreive alignments.
Alignment[]	DASAlignmentCall.getAlignments(java.lang.String query)	connect to a DAS alignment service and retreive data.
Alignment[]	DASAlignmentClient.getAlignments()	Returns the alignments.
Alignment[]	DASAlignmentClient.getAlignments(java.lang.String query_)	Returns the alignments.
Alignment[]	DASAlignmentXMLResponseParser.getAlignments()	Returns the alignments.
Alignment[]	DASAlignmentCall.parseDASResponse(java.io.InputStream inStream)	parse the Response of a DAS ALignment service and return a biojava Alignment object.