Package org.biojava.bio.program.fastq

Class Fastq

  • public final class Fastq
extends java.lang.Object
    FASTQ formatted sequence.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String getDescription()
      Return the description of this FASTQ formatted sequence.
      java.lang.String getQuality()
      Return the quality scores for this FASTQ formatted sequence.
      java.lang.String getSequence()
      Return the sequence for this FASTQ formatted sequence.
      FastqVariant getVariant()
      Return the FASTQ sequence format variant for this FASTQ formatted sequence.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Method Detail

      • getDescription

        public java.lang.String getDescription()
        Return the description of this FASTQ formatted sequence. The description will not be null.
        Returns:
        the description of this FASTQ formatted sequence

      • getSequence

        public java.lang.String getSequence()
        Return the sequence for this FASTQ formatted sequence. The sequence will not be null.
        Returns:
        the sequence for this FASTQ formatted sequence

      • getQuality

        public java.lang.String getQuality()
        Return the quality scores for this FASTQ formatted sequence. The quality scores will not be null.
        Returns:
        the quality scores for this FASTQ formatted sequence

      • getVariant

        public FastqVariant getVariant()
        Return the FASTQ sequence format variant for this FASTQ formatted sequence. The FASTQ sequence format variant will not be null.
        Returns:
        the FASTQ sequence format variant for this FASTQ formatted sequence