Uses of Class
org.biojava.bio.program.fastq.Fastq

Packages that use Fastq

Package	Description
org.biojava.bio.program.fastq	FASTQ and variants sequence format IO.

Uses of Fastq in org.biojava.bio.program.fastq

Methods in org.biojava.bio.program.fastq that return Fastq

Modifier and Type	Method	Description
Fastq	FastqBuilder.build()	Build and return a new FASTQ formatted sequence configured from the properties of this builder.

Methods in org.biojava.bio.program.fastq that return types with arguments of type Fastq

Modifier and Type	Method	Description
java.lang.Iterable<Fastq>	FastqReader.read(java.io.File file)	Read zero or more FASTQ formatted sequences from the specified file.
java.lang.Iterable<Fastq>	FastqReader.read(java.io.InputStream inputStream)	Read zero or more FASTQ formatted sequences from the specified input stream.
java.lang.Iterable<Fastq>	FastqReader.read(java.net.URL url)	Read zero or more FASTQ formatted sequences from the specified url.

Methods in org.biojava.bio.program.fastq with parameters of type Fastq

Modifier and Type	Method	Description
<T extends java.lang.Appendable> T	FastqWriter.append(T appendable, Fastq... fastq)	Append the specified FASTQ formatted sequences to the specified appendable.
protected void	IlluminaFastqWriter.validate(Fastq fastq)	Validate the specified FASTQ formatted sequence for writing.
protected void	SangerFastqWriter.validate(Fastq fastq)	Validate the specified FASTQ formatted sequence for writing.
protected void	SolexaFastqWriter.validate(Fastq fastq)	Validate the specified FASTQ formatted sequence for writing.
void	FastqWriter.write(java.io.File file, Fastq... fastq)	Write the specified FASTQ formatted sequences to the specified file.
void	FastqWriter.write(java.io.OutputStream outputStream, Fastq... fastq)	Write the specified FASTQ formatted sequences to the specified output stream.

Method parameters in org.biojava.bio.program.fastq with type arguments of type Fastq

Modifier and Type	Method	Description
<T extends java.lang.Appendable> T	FastqWriter.append(T appendable, java.lang.Iterable<Fastq> fastq)	Append the specified FASTQ formatted sequences to the specified appendable.
void	FastqWriter.write(java.io.File file, java.lang.Iterable<Fastq> fastq)	Write the specified FASTQ formatted sequences to the specified file.
void	FastqWriter.write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq)	Write the specified FASTQ formatted sequences to the specified output stream.