Package org.biojava.bio.program.homologene

Interface Orthologue

  • All Known Implementing Classes:
    SimpleOrthologue
    public interface Orthologue
    this entry contains data about the orthologue.

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      java.lang.String getAccession()
      get the Accession ID associated with this orthologue.
      java.lang.String getHomologeneID()
      get the Homologene ID.
      java.lang.String getLocusID()
      get the locus ID associated with this orthologue.
      Taxon getTaxon()
      return the Taxon associated with this orthologue
      int getTaxonID()
      a convenience method to return the TaxonID for thsi orhtologue.
      java.lang.String getTitle()
      return the title used by Genbank for this protein
      void setTitle​(java.lang.String title)  

    • Method Detail

      • getTitle

        java.lang.String getTitle()
        return the title used by Genbank for this protein

      • getTaxon

        Taxon getTaxon()
        return the Taxon associated with this orthologue

      • getTaxonID

        int getTaxonID()
        a convenience method to return the TaxonID for thsi orhtologue.

      • getLocusID

        java.lang.String getLocusID()
        get the locus ID associated with this orthologue. It can be null.

      • getHomologeneID

        java.lang.String getHomologeneID()
        get the Homologene ID. This is unique and always defined.

      • getAccession

        java.lang.String getAccession()
        get the Accession ID associated with this orthologue.

      • setTitle

        void setTitle​(java.lang.String title)