Package org.biojava.bio

Class AnnotationChanger

java.lang.Object
org.biojava.utils.AbstractChangeable
org.biojava.bio.AbstractAnnotation
org.biojava.bio.AnnotationChanger
All Implemented Interfaces:
Serializable, Annotation, Changeable
public class AnnotationChanger extends AbstractAnnotation
AnnotationChanger remaps the values of an Annotation to new values specified by a ValueChanger. This will modify the values associated with properties, but not the property names. For writing light-weigth adaptors to project one type of Annotation to another using a ChangeTable.
Since:
1.3
Author:
Matthew Pocock
See Also:

  • Constructor Details

    • AnnotationChanger

      public AnnotationChanger(Annotation wrapped, ChangeTable changer)
      Creates a new AnnotationChanger using the specified ValueChanger to remap its values.
      Parameters:
      wrapped - an Annotation.
      changer - a ValueChanger.

  • Method Details

    • getWrapped

      public Annotation getWrapped()
      getWrapped returns the Annotation being remapped.
      Returns:
      an Annotation.

    • getChanger

      public ChangeTable getChanger()
      getMapper returns the ValueChanger being used to remap the Annotation.
      Returns:
      a ValueChanger.

    • getProperties

      public Map getProperties()
      getProperties returns the mapped contents of the underlying Annotation as a Map.
      Specified by:
      getProperties in class AbstractAnnotation
      Returns:
      a Map.

    • propertiesAllocated

      public boolean propertiesAllocated()
      propertiesAllocated is a convenience method to see if we have allocated the properties Map.
      Specified by:
      propertiesAllocated in class AbstractAnnotation
      Returns:
      a boolean true if the properties have been allocated, false otherwise.