Uses of Class
org.biojava.bio.chromatogram.graphic.ChromatogramGraphic.Option
Packages that use ChromatogramGraphic.Option
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Uses of ChromatogramGraphic.Option in org.biojava.bio.chromatogram.graphic
Fields in org.biojava.bio.chromatogram.graphic declared as ChromatogramGraphic.OptionModifier and TypeFieldDescriptionstatic final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_AOption indicating whether to fill in the callboxes for calls of nucleotide A.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_COption indicating whether to fill in the callboxes for calls of nucleotide C.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_GOption indicating whether to fill in the callboxes for calls of nucleotide G.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_OTHEROption indicating whether to fill in the callboxes for non-base calls (gaps, ambiguities).static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_SEPARATORSOption indicating whether to draw vertical lines separating the calls.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_CALL_TOption indicating whether to fill in the callboxes for calls of nucleotide T.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_TRACE_AOption indicating whether to draw the chromatogram trace for nucleotide A.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_TRACE_COption indicating whether to draw the chromatogram trace for nucleotide C.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_TRACE_GOption indicating whether to draw the chromatogram trace for nucleotide G.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.DRAW_TRACE_TOption indicating whether to draw the chromatogram trace for nucleotide T.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.FROM_TRACE_SAMPLEOption indicating the lowest (leftmost) trace sample that should be drawn.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.HEIGHT_IS_AUTHORITATIVEOption indicating whether height or vertical scale is the authoritative measure.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.HORIZONTAL_NONLINEAR_SCALEROption specifying the non-linear scaling function to apply, as embodied in aChromatogramNonlinearScalerobject.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.SEPARATOR_COLOROption indicating the color that the call separators should be.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.SEPARATOR_STROKEOption providing the the stroke to use for drawing call separators.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.SUBPATH_LENGTHTo improve performance, the drawing objects for the chromatogram traces are precomputed.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.TO_TRACE_SAMPLEOption indicating the highest (rightmost) trace sample that should be drawn.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.TRACE_STROKEOption providing the the stroke to use for drawing the chromatogram traces.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.USE_CUSTOM_STROKEOption indicating whether to use custom strokes when drawing traces and separators.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.USE_PER_SHAPE_TRANSFORMOption indicating whether to apply scaling and translation transforms to each shape individually or to apply a single transform to the graphics context.static final ChromatogramGraphic.OptionChromatogramGraphic.Option.WIDTH_IS_AUTHORITATIVEOption indicating whether width or horizontal scale is the authoritative measure.Methods in org.biojava.bio.chromatogram.graphic that return ChromatogramGraphic.OptionModifier and TypeMethodDescriptionstatic final ChromatogramGraphic.OptionLooks up anOptioninstance based on its string description.Methods in org.biojava.bio.chromatogram.graphic with parameters of type ChromatogramGraphic.OptionModifier and TypeMethodDescriptionfloatChromatogramGraphic.getFloatOption(ChromatogramGraphic.Option opt) Helper method for converting aNumber-valued option into afloatprimitive.intChromatogramGraphic.getIntOption(ChromatogramGraphic.Option opt) Helper method for converting aNumber-valued option into anintprimitive.ChromatogramGraphic.getOption(ChromatogramGraphic.Option opt) Returns the current value for the specified option.booleanChromatogramGraphic.optionIsTrue(ChromatogramGraphic.Option opt) Helper method for converting aBoolean-valued option into abooleanprimitive.voidChromatogramGraphic.setOption(ChromatogramGraphic.Option opt, Object value) Sets a new value for the specified option.