Class UniformDistribution

Method Details

• getAlphabet

  public Alphabet getAlphabet()

  Description copied from interface: Distribution

  The alphabet from which this spectrum emits symbols.

  Specified by:

  getAlphabet in interface Distribution

  Returns:

  the Alphabet associated with this spectrum

• getNullModel

  public Distribution getNullModel()

  Description copied from interface: Distribution

  Retrieve the null model Distribution that this Distribution recognizes.

  Specified by:

  getNullModel in interface Distribution

  Returns:

  the apropriate null model

• setNullModelImpl

  protected void setNullModelImpl(Distribution nullModel) throws IllegalAlphabetException

  Assign a background distribution.

  Specified by:

  setNullModelImpl in class AbstractDistribution

  Parameters:

  nullModel - the background distribution to assign

  Throws:

  IllegalAlphabetException - if nullModel is over an incompattible alphabet

• getWeightImpl

  protected double getWeightImpl(AtomicSymbol s) throws IllegalSymbolException

  Description copied from class: AbstractDistribution

  Override this method to implement getting the weight for an atomic symbol. You should just do what is necessary to fetch state. All the work with exceptions and listeners will have been handled for you.

  Specified by:

  getWeightImpl in class AbstractDistribution

  Parameters:

  s - the AtomicSymbol to get the weight for

  Returns:

  the weight

  Throws:

  IllegalSymbolException - if sym is not known

• setWeightImpl

  protected void setWeightImpl(AtomicSymbol sym, double weight) throws ChangeVetoException

  Description copied from class: AbstractDistribution

  Implement this to actually set the weight.

  Do not inform any listeners. This has already been done for you. Just update state.

  Specified by:

  setWeightImpl in class AbstractDistribution

  Parameters:

  sym - the AtomicSymbol to update for

  weight - the new weight for that symbol

  Throws:

  ChangeVetoException - if the change is to be prevented

• registerWithTrainer

  public void registerWithTrainer(DistributionTrainerContext dtc)

  Description copied from class: AbstractDistribution

  Register an IgnoreCountsTrainer instance as the trainer for this distribution. Override this if you wish to implement a trainable distribution.

  Specified by:

  registerWithTrainer in interface Distribution

  Overrides:

  registerWithTrainer in class AbstractDistribution

  Parameters:

  dtc - the context to register with