org.biojava.bio.dist.UntrainableDistribution

All Implemented Interfaces:: Serializable, Distribution, Changeable

public class UntrainableDistribution extends SimpleDistribution

A distribution which does not interact with the training framework. This class behaves in exactly the same manner as SimpleDistribution, except that it has a no-op registerWithTrainer method. It is useful for building Markov models where you wish to train only a subset of the Distributions.

Since:

1.3

Author:

Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.biojava.bio.dist.SimpleDistribution
SimpleDistribution.Trainer

Nested classes/interfaces inherited from interface org.biojava.bio.dist.Distribution
Distribution.NullModelForwarder
Field Summary

Fields inherited from class org.biojava.bio.dist.AbstractDistribution
nullModelForwarder

Fields inherited from interface org.biojava.bio.dist.Distribution
NULL_MODEL, WEIGHTS
Constructor Summary

Constructors

Constructor

Description

UntrainableDistribution(FiniteAlphabet alpha)

Construct a new untrainable distribution over the specified alphabet.
Method Summary

Modifier and Type

Method

Description

void

registerWithTrainer(DistributionTrainerContext dtc)

Register an SimpleDistribution.Trainer instance as the trainer for this distribution.

Methods inherited from class org.biojava.bio.dist.SimpleDistribution
getAlphabet, getNullModel, getWeightImpl, getWeights, hasWeights, setNullModelImpl, setWeightImpl

Methods inherited from class org.biojava.bio.dist.AbstractDistribution
equals, getChangeSupport, getWeight, hashCode, sampleSymbol, setNullModel, setWeight

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Details
- UntrainableDistribution
  
  public UntrainableDistribution(FiniteAlphabet alpha)
  
  Construct a new untrainable distribution over the specified alphabet.
  
  Parameters:
  
  alpha - the finite alphabet to be over
Method Details
- registerWithTrainer
  
  public void registerWithTrainer(DistributionTrainerContext dtc)
  
  Description copied from class: SimpleDistribution
  
  Register an SimpleDistribution.Trainer instance as the trainer for this distribution.
  
  Specified by:
  
  registerWithTrainer in interface Distribution
  
  Overrides:
  
  registerWithTrainer in class SimpleDistribution
  
  Parameters:
  
  dtc - the context to register with

Class UntrainableDistribution

Nested Class Summary

Nested classes/interfaces inherited from class org.biojava.bio.dist.SimpleDistribution

Nested classes/interfaces inherited from interface org.biojava.bio.dist.Distribution

Field Summary

Fields inherited from class org.biojava.bio.dist.AbstractDistribution

Fields inherited from interface org.biojava.bio.dist.Distribution

Constructor Summary

Method Summary

Methods inherited from class org.biojava.bio.dist.SimpleDistribution

Methods inherited from class org.biojava.bio.dist.AbstractDistribution

Methods inherited from class org.biojava.utils.AbstractChangeable

Methods inherited from class java.lang.Object

Methods inherited from interface org.biojava.utils.Changeable

Constructor Details

UntrainableDistribution

Method Details

registerWithTrainer