Uses of Interface
org.biojava.bio.dist.DistributionTrainerContext
Packages that use DistributionTrainerContext
Package
Description
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
-
Uses of DistributionTrainerContext in org.biojava.bio.dist
Classes in org.biojava.bio.dist that implement DistributionTrainerContextModifier and TypeClassDescriptionclassA no-frills implementation of DistributionTrainerContext.Methods in org.biojava.bio.dist with parameters of type DistributionTrainerContextModifier and TypeMethodDescriptionvoidDistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times) Registers that sym was counted in this state.voidIgnoreCountsTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times) voidSimpleDistribution.Trainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times) voidSimpleDistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double count) Deprecated.voidDistributionTrainer.clearCounts(DistributionTrainerContext dtc) Clears all of the counts to zero.voidIgnoreCountsTrainer.clearCounts(DistributionTrainerContext dtc) voidSimpleDistribution.Trainer.clearCounts(DistributionTrainerContext dtc) voidSimpleDistributionTrainer.clearCounts(DistributionTrainerContext dtc) Deprecated.doubleDistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) Get the current count for this state.doubleIgnoreCountsTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) doubleSimpleDistribution.Trainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) doubleSimpleDistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym) Deprecated.voidAbstractDistribution.registerWithTrainer(DistributionTrainerContext dtc) Register an IgnoreCountsTrainer instance as the trainer for this distribution.voidAbstractOrderNDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidDistribution.registerWithTrainer(DistributionTrainerContext dtc) Register this distribution with a training context.voidGapDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidPairDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidSimpleDistribution.registerWithTrainer(DistributionTrainerContext dtc) Register an SimpleDistribution.Trainer instance as the trainer for this distribution.voidTranslatedDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidUniformDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidUntrainableDistribution.registerWithTrainer(DistributionTrainerContext dtc) voidDistributionTrainer.train(DistributionTrainerContext dtc, double weight) Trains the Distribution, given a null model.voidIgnoreCountsTrainer.train(DistributionTrainerContext dtc, double weight) voidSimpleDistribution.Trainer.train(DistributionTrainerContext dtc, double weight) voidSimpleDistributionTrainer.train(DistributionTrainerContext dtc, double weight) Deprecated.protected voidSimpleDistribution.Trainer.trainImpl(DistributionTrainerContext dtc, double weight) -
Uses of DistributionTrainerContext in org.biojava.bio.dp
Subinterfaces of DistributionTrainerContext in org.biojava.bio.dpModifier and TypeInterfaceDescriptioninterfaceEncapsulates the training of an entire model.Classes in org.biojava.bio.dp that implement DistributionTrainerContext