Uses of Interface
org.biojava.bio.dist.OrderNDistribution
Packages that use OrderNDistribution
Package
Description
Probability distributions over Alphabets.
GA functions
Utility functions and helper classes
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Uses of OrderNDistribution in org.biojava.bio.dist
Classes in org.biojava.bio.dist that implement OrderNDistributionModifier and TypeClassDescriptionclassSimple base class for OrderNDistributions.Methods in org.biojava.bio.dist with parameters of type OrderNDistributionModifier and TypeMethodDescriptionprotected static final SequenceDistributionTools.generateOrderNSequence(String name, OrderNDistribution d, int length) Deprecated.use generateSequence() or generateSymbolList() instead. -
Uses of OrderNDistribution in org.biojavax.ga.functions
Methods in org.biojavax.ga.functions that return OrderNDistributionModifier and TypeMethodDescriptionfinal OrderNDistributionAbstractMutationFunction.getMutationSpectrum()MutationFunction.getMutationSpectrum()MutationFunction.NoMutation.getMutationSpectrum()Methods in org.biojavax.ga.functions with parameters of type OrderNDistributionModifier and TypeMethodDescriptionfinal voidAbstractMutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum) voidMutationFunction.NoMutation.setMutationSpectrum(OrderNDistribution odn) voidMutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum) Sets theDistributionofSymbolsthat will be selected from when a mutation occurs. -
Uses of OrderNDistribution in org.biojavax.ga.util
Methods in org.biojavax.ga.util that return OrderNDistributionModifier and TypeMethodDescriptionstatic OrderNDistributionGATools.standardMutationDistribution(FiniteAlphabet a) Makes a mutationDistributionwhere the probability of aSymbolbeing mutated to itself is zero and the probability of it being changed to any otherSymbolin theAlphabet ais1.0 / (a.size() - 1.0)static OrderNDistributionGATools.uniformMutationDistribution(FiniteAlphabet a) Makes a 1st order distribution which is infact uniform (equivalent to a uniform zero order distribution).