HMMTrainer (biojava-legacy 1.9.7 API)

All Known Implementing Classes:: SimpleHMMTrainer

public interface HMMTrainer

interface implemented by objects that train HMMs.

Author:: David Huen

Method Summary

Modifier and Type

Method

Description

void

completeCycle()

indicate that a cycle of training is completed and the emission/transition matrices should be updated.

void

recordEmittedSymbol(State state, Symbol symbol, double weight)

record that the specified symbol was emitted from the specified state.

void

recordTransition(State source, State dest, double weight)

record that a transition was observed between the specified states.

void

startCycle()

called to put the trainer into an initial state for a new round of training.

Method Details
- startCycle
  
  void startCycle()
  
  called to put the trainer into an initial state for a new round of training.
- recordEmittedSymbol
  
  void recordEmittedSymbol(State state, Symbol symbol, double weight) throws IllegalSymbolException
  
  record that the specified symbol was emitted from the specified state.
  
  Throws:
  
  IllegalSymbolException
- recordTransition
  
  void recordTransition(State source, State dest, double weight) throws IllegalArgumentException
  
  record that a transition was observed between the specified states.
  
  Throws:
  
  IllegalArgumentException
- completeCycle
  
  void completeCycle() throws BioException
  
  indicate that a cycle of training is completed and the emission/transition matrices should be updated.
  
  Throws:
  
  BioException