Package org.biojava.bio.dp
Class MagicalState
java.lang.Object
org.biojava.utils.AbstractChangeable
org.biojava.bio.dp.SimpleEmissionState
org.biojava.bio.dp.MagicalState
- All Implemented Interfaces:
Serializable,Annotatable,EmissionState,State,Trainable,AtomicSymbol,BasisSymbol,Symbol,Changeable
Start/end state for HMMs.
All MagicalState objects emit over MAGICAL_ALPHABET, which only contains MAGICAL_STATE.
- Author:
- Matthew Pocock
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder -
Field Summary
Fields inherited from class org.biojava.bio.dp.SimpleEmissionState
annotationForwarder, distForwarderFields inherited from interface org.biojava.bio.Annotatable
ANNOTATIONFields inherited from interface org.biojava.bio.dp.EmissionState
ADVANCE, DISTRIBUTION -
Method Summary
Modifier and TypeMethodDescriptionstatic MagicalStategetMagicalState(Alphabet alphabet, int heads) Methods inherited from class org.biojava.bio.dp.SimpleEmissionState
getAdvance, getAnnotation, getBases, getChangeSupport, getDistribution, getMatches, getName, getSymbols, getToken, registerWithTrainer, setAdvance, setAnnotation, setDistribution, setNameMethods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListenerMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
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Method Details
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getMagicalState
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