TrainingAlgorithm (biojava-legacy 1.9.7 API)

All Known Implementing Classes:: AbstractTrainer, BaumWelchSampler, BaumWelchTrainer

public interface TrainingAlgorithm

Author:: Matthew Pocock, Thomas Down

Method Summary

Modifier and Type

Method

Description

double

getCurrentScore()

int

getCycle()

DP

getDP()

double

getLastScore()

void

train(SequenceDB db, double nullWeight, StoppingCriteria stopper)

Trains the sequences in db untill stopper says to finnish.

Method Details
- getDP
  
  DP getDP()
- getLastScore
  
  double getLastScore()
- getCurrentScore
  
  double getCurrentScore()
- getCycle
  
  int getCycle()
- train
  
  void train(SequenceDB db, double nullWeight, StoppingCriteria stopper) throws IllegalSymbolException, BioException
  
  Trains the sequences in db untill stopper says to finnish.
  
  Throws:
  
  IllegalSymbolException
  
  BioException