Uses of Class org.biojava.bio.dp.BackPointer (biojava-legacy 1.9.7 API)

Packages that use BackPointer

Package

Description

org.biojava.bio.dp

HMM and Dynamic Programming Algorithms.

org.biojava.bio.dp.twohead

Uses of BackPointer in org.biojava.bio.dp

Fields in org.biojava.bio.dp declared as BackPointer

Modifier and Type

Field

Description

final BackPointer

BackPointer.back

The previous backpointer (towards origin of DP matrix) in traceback.

Constructors in org.biojava.bio.dp with parameters of type BackPointer

Modifier

Constructor

Description

BackPointer(State state, BackPointer back, double score)
Uses of BackPointer in org.biojava.bio.dp.twohead

Fields in org.biojava.bio.dp.twohead declared as BackPointer

Modifier and Type

Field

Description

BackPointer[]

Cell.backPointers

protected BackPointer[][][]

AbstractMatrixPairDPCursor.bPointers

protected BackPointer[][][]

LightPairDPCursor.bPointers

Description of the Field

protected BackPointer[]

AbstractMatrixPairDPCursor.emptyBP

protected BackPointer[]

LightPairDPCursor.emptyBP

Description of the Field

Methods in org.biojava.bio.dp.twohead with parameters of type BackPointer

Modifier and Type

Method

Description

CellCalculator

CellCalculatorFactory.viterbi(ScoreType scoreType, BackPointer terminal)

CellCalculator

DPInterpreter.viterbi(ScoreType scoreType, BackPointer terminal)