Uses of Class
org.biojava.bio.dp.DP
Packages that use DP
Package
Description
HMM and Dynamic Programming Algorithms.
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Uses of DP in org.biojava.bio.dp
Methods in org.biojava.bio.dp that return DPModifier and TypeMethodDescriptionDPFactory.createDP(MarkovModel model) DPFactory.DefaultFactory.createDP(MarkovModel model) AbstractTrainer.getDP()TrainingAlgorithm.getDP()Constructors in org.biojava.bio.dp with parameters of type DPModifierConstructorDescriptionAbstractTrainer(DP dp) BaumWelchSampler(DP dp) BaumWelchTrainer(DP dp) -
Uses of DP in org.biojava.bio.dp.onehead
Subclasses of DP in org.biojava.bio.dp.oneheadModifier and TypeClassDescriptionclassAn implementation of DP that aligns a single sequence against a single model.Constructors in org.biojava.bio.dp.onehead with parameters of type DP -
Uses of DP in org.biojava.bio.dp.twohead
Subclasses of DP in org.biojava.bio.dp.twoheadModifier and TypeClassDescriptionclassAlgorithms for dynamic programming (alignments) between pairs of SymbolLists.Methods in org.biojava.bio.dp.twohead with parameters of type DPModifier and TypeMethodDescriptionDPCompiler.generateBackwardClass(DP dp) DPCompiler.generateForardClass(DP dp) DPCompiler.generateViterbiClass(DP dp) Constructors in org.biojava.bio.dp.twohead with parameters of type DPModifierConstructorDescriptionDPInterpreter(DP dp) PairDPMatrix(DP dp, SymbolList seq0, SymbolList seq1)