Uses of Interface
org.biojava.bio.dp.ModelTrainer
Packages that use ModelTrainer
Package
Description
Probability distributions over Alphabets.
HMM and Dynamic Programming Algorithms.
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Uses of ModelTrainer in org.biojava.bio.dist
Methods in org.biojava.bio.dist with parameters of type ModelTrainerModifier and TypeMethodDescriptionvoidPairDistribution.registerWithTrainer(ModelTrainer trainer) Register this paired distribution with a model trainer. -
Uses of ModelTrainer in org.biojava.bio.dp
Classes in org.biojava.bio.dp that implement ModelTrainerMethods in org.biojava.bio.dp with parameters of type ModelTrainerModifier and TypeMethodDescriptionvoidSimpleEmissionState.registerWithTrainer(ModelTrainer trainer) voidTrainable.registerWithTrainer(ModelTrainer mt) Perform any registration that is necessary with mt.voidWMAsMM.registerWithTrainer(ModelTrainer modelTrainer) protected abstract doubleAbstractTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList) protected doubleBaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList) protected doubleBaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList, ScoreType scoreType) protected doubleBaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)