Uses of Interface org.biojava.bio.dp.TrainingAlgorithm (biojava-legacy 1.9.7 API)

Packages that use TrainingAlgorithm

Package

Description

org.biojava.bio.dp

HMM and Dynamic Programming Algorithms.

Uses of TrainingAlgorithm in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement TrainingAlgorithm

Modifier and Type

Class

Description

class

AbstractTrainer

An abstract implementation of TrainingAlgorithm that provides a framework for plugging in per-cycle code for parameter optimization.

class

BaumWelchSampler

Train a hidden markov model using a sampling algorithm.

class

BaumWelchTrainer

Train a hidden markov model using maximum likelihood.

Methods in org.biojava.bio.dp with parameters of type TrainingAlgorithm

Modifier and Type

Method

Description

boolean

StoppingCriteria.isTrainingComplete(TrainingAlgorithm ta)

Decide if the training has completed.