org.biojava.bio.dp.onehead.SingleDPMatrix

The dynamic programming matrix for a single sequence.

Author:

Matthew Pocock, Lukas Kall

See Also:

Field Details
- states
  
  protected final State[] states
- model
  
  protected final MarkovModel model
- symList
  
  protected final SymbolList[] symList
- scores
  
  public final double[][] scores
- score
  
  protected double score
Constructor Details
- SingleDPMatrix
  
  public SingleDPMatrix(DP dp, SymbolList symList)
Method Details
- states
  
  public State[] states()
  
  Specified by:
  
  states in interface DPMatrix
- model
  
  public MarkovModel model()
  
  Specified by:
  
  model in interface DPMatrix
- symList
  
  public SymbolList[] symList()
  
  Specified by:
  
  symList in interface DPMatrix
- getScore
  
  public double getScore()
  
  Specified by:
  
  getScore in interface DPMatrix
- setScore
  
  public void setScore(double score)
- getCell
  
  public double getCell(int[] index) throws IndexOutOfBoundsException
  
  Specified by:
  
  getCell in interface DPMatrix
  
  Throws:
  
  IndexOutOfBoundsException

Class SingleDPMatrix

Field Summary