Package org.biojava.bio.dp.onehead

Class SmallCursor

java.lang.Object
org.biojava.bio.dp.onehead.SmallCursor
All Implemented Interfaces:
DPCursor
public class SmallCursor extends Object
Constant-memory implementation of single-head DP cursor.
Author:
Matthew Pocock

  • Constructor Details

  • Method Details

    • symList

      public SymbolList symList()
      Description copied from interface: DPCursor
      The symbol list being looped over.

    • length

      public int length()
      Description copied from interface: DPCursor

      The length of the sequence.

      The matrix may allocate length+1 columns.

    • currentCol

      public double[] currentCol()
      Description copied from interface: DPCursor
      The current column of the matrix.

    • lastCol

      public double[] lastCol()
      Description copied from interface: DPCursor
      The previous column.

    • advance

      public void advance()
      Description copied from interface: DPCursor
      Advance.
      Specified by:
      advance in interface DPCursor

    • currentRes

      public Symbol currentRes()
      Description copied from interface: DPCursor
      The current symbol.
      Specified by:
      currentRes in interface DPCursor

    • lastRes

      public Symbol lastRes()
      Description copied from interface: DPCursor
      The previous symbol.
      Specified by:
      lastRes in interface DPCursor

    • canAdvance

      public boolean canAdvance()
      Description copied from interface: DPCursor
      Can we advance?
      Specified by:
      canAdvance in interface DPCursor