org.biojava.bio.gui.sequence.GlyphFeatureRenderer

All Implemented Interfaces:: Serializable, FeatureRenderer, SequenceRenderer, Changeable

Direct Known Subclasses:: SecondaryStructureFeatureRenderer

public class GlyphFeatureRenderer extends FilteringRenderer implements FeatureRenderer

A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter

Since:

1.5

Author:

Mark Southern, Andreas Dräger

See Also:

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderer
SequenceRenderer.RendererForwarder
Field Summary

Fields

Modifier and Type

Field

Description

protected List<FeatureFilter>

fList

protected List<Glyph>

gList

Fields inherited from class org.biojava.bio.gui.sequence.FilteringRenderer
filter, FILTER, recurse, RECURSE

Fields inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper
RENDERER
Constructor Summary

Constructors

Constructor

Description

GlyphFeatureRenderer()
Method Summary

Modifier and Type

Method

Description

void

addFilterAndGlyph(FeatureFilter ff, Glyph g)

boolean

containsFilter(FeatureFilter ff)

Returns true if the given FeatureFilter is already contained in this renderer.

double

getDepth(SequenceRenderContext src)

Returns the depth property of this class.

FeatureFilter

getFeatureFilter(int i)

Returns the ith FeatureFilter in this renderer.

Glyph

getGlyphForFilter(FeatureFilter ff)

Returns the Glyph object which is assigned to the given feature filter.

FeatureHolder

processMouseEvent(FeatureHolder fh, SequenceRenderContext src, MouseEvent me)

void

removeFilterWithGlyph(FeatureFilter ff)

void

renderFeature(Graphics2D g2, Feature f, SequenceRenderContext src)

void

setDepth(double depth)

void

setGlyphForFilter(FeatureFilter ff, Glyph glyph)

Allows setting another Glyph object to be painted for the given FeatureFilter.

Methods inherited from class org.biojava.bio.gui.sequence.FilteringRenderer
getChangeSupport, getContext, getFilter, getMinimumLeader, getMinimumTrailer, getRecurse, hasListeners, paint, processMouseEvent, setFilter, setRecurse, toString

Methods inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper
getRenderer, setRenderer

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- fList
  
  protected List<FeatureFilter> fList
- gList
  
  protected List<Glyph> gList
Constructor Details
- GlyphFeatureRenderer
  
  public GlyphFeatureRenderer()
Method Details
- addFilterAndGlyph
  
  public void addFilterAndGlyph(FeatureFilter ff, Glyph g) throws ChangeVetoException
  
  Throws:
  
  ChangeVetoException
- removeFilterWithGlyph
  
  public void removeFilterWithGlyph(FeatureFilter ff) throws ChangeVetoException
  
  Throws:
  
  ChangeVetoException
- getFeatureFilter
  
  public FeatureFilter getFeatureFilter(int i)
  
  Returns the ith FeatureFilter in this renderer.
  
  Parameters:
  
  i -
  
  Returns:
  
  the featureFilter
- containsFilter
  
  public boolean containsFilter(FeatureFilter ff)
  
  Returns true if the given FeatureFilter is already contained in this renderer.
  
  Parameters:
  
  ff -
  
  Returns:
  
  flag if featurefilter is contained
- setGlyphForFilter
  
  public void setGlyphForFilter(FeatureFilter ff, Glyph glyph) throws NoSuchElementException
  
  Allows setting another Glyph object to be painted for the given FeatureFilter.
  
  Parameters:
  
  ff -
  
  glyph -
  
  Throws:
  
  ChangeVetoException
  
  NoSuchElementException
- getGlyphForFilter
  
  public Glyph getGlyphForFilter(FeatureFilter ff) throws NoSuchElementException
  
  Returns the Glyph object which is assigned to the given feature filter.
  
  Parameters:
  
  ff -
  
  Returns:
  
  Glyph object
  
  Throws:
  
  NoSuchElementException
- setDepth
  
  public void setDepth(double depth)
- getDepth
  
  public double getDepth(SequenceRenderContext src)
  
  Returns the depth property of this class.
  
  Specified by:
  
  getDepth in interface FeatureRenderer
  
  Specified by:
  
  getDepth in interface SequenceRenderer
  
  Overrides:
  
  getDepth in class FilteringRenderer
  
  Parameters:
  
  src - the SequenceRenderContext to return info for
  
  Returns:
  
  the depth
- processMouseEvent
  
  public FeatureHolder processMouseEvent(FeatureHolder fh, SequenceRenderContext src, MouseEvent me)
  
  Specified by:
  
  processMouseEvent in interface FeatureRenderer
- renderFeature
  
  public void renderFeature(Graphics2D g2, Feature f, SequenceRenderContext src)
  
  Specified by:
  
  renderFeature in interface FeatureRenderer

Class GlyphFeatureRenderer

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderer

Field Summary

Fields inherited from class org.biojava.bio.gui.sequence.FilteringRenderer

Fields inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper

Constructor Summary

Method Summary

Methods inherited from class org.biojava.bio.gui.sequence.FilteringRenderer

Methods inherited from class org.biojava.bio.gui.sequence.SequenceRendererWrapper

Methods inherited from class org.biojava.utils.AbstractChangeable

Methods inherited from class java.lang.Object

Field Details

fList

gList

Constructor Details

GlyphFeatureRenderer

Method Details

addFilterAndGlyph

removeFilterWithGlyph

getFeatureFilter

containsFilter

setGlyphForFilter

getGlyphForFilter

setDepth

getDepth

processMouseEvent

renderFeature