Uses of Interface
org.biojava.bio.gui.sequence.FeatureRenderer
Packages that use FeatureRenderer
Package
Description
Graphical displays of biological sequences and associated annotations.
-
Uses of FeatureRenderer in org.biojava.bio.gui.sequence
Subinterfaces of FeatureRenderer in org.biojava.bio.gui.sequenceModifier and TypeInterfaceDescriptioninterfaceBeadFeatureRenderers use a 'string of beads' metaphor for displaying features.interfaceImageMapRenderers create strings representingFeatures suitable for use in HTML image maps.Classes in org.biojava.bio.gui.sequence that implement FeatureRendererModifier and TypeClassDescriptionclassAbstractBeadRendereris a an abstract base class for the creation ofFeatureRenderers which use a 'string of beads' metaphor for displaying features.classA Feature Renderer that paints the Feature as a right facing arrow Based heavily on BasicFeatureRendererclassclassBasicImapRendereris a decorator forBasicFeatureRendererwhich adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theBasicFeatureRenderer.classEllipticalBeadRendererrenders features as simple ellipses.classclassA FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilterclassRectangularBeadRendererrenders features as simple rectangles.classRectangularImapRendereris a decorator forRectangularBeadRendererwhich adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theRectangularBeadRenderer.classRoundRectangularBeadRendererrenders features as rectangles with rounded corners.classA GlyphRenderer subclass that specificatlly handles Features pertaining to Secondary Structure (Helices, Turns and Strands).classA feature renderer that computes the data necessary to render multi-exon transcripts without CDS data.classAllows you to stack multiple feature renderers up (for example a label renderer and a beaded renderer) and have them treated as a single renderer for layout.classclassA feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.classZiggyImapRendereris a decorator forZiggyFeatureRendererwhich adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by theZiggyFeatureRenderer.Methods in org.biojava.bio.gui.sequence that return FeatureRendererModifier and TypeMethodDescriptionabstract FeatureRendererAbstractPeptideDigestRenderer.createRenderer(int lane) PeptideDigestRenderer.createRenderer(int lane) FeatureBlockSequenceRenderer.getFeatureRenderer()getFeatureRendererreturns the currently active renderer.Methods in org.biojava.bio.gui.sequence with parameters of type FeatureRendererModifier and TypeMethodDescriptionvoidStackedFeatureRenderer.addRenderer(FeatureRenderer renderer) voidStackedFeatureRenderer.removeRenderer(FeatureRenderer renderer) voidFeatureBlockSequenceRenderer.setFeatureRenderer(FeatureRenderer renderer) setFeatureRenderersets the renderer to be used.Constructors in org.biojava.bio.gui.sequence with parameters of type FeatureRendererModifierConstructorDescriptionCreates a newFeatureBlockSequenceRendererwhich uses the specifiedFeatureRenderer.