Uses of Interface
org.biojava.bio.gui.sequence.PairwiseSequenceRenderer
Packages that use PairwiseSequenceRenderer
Package
Description
Graphical displays of biological sequences and associated annotations.
-
Uses of PairwiseSequenceRenderer in org.biojava.bio.gui.sequence
Classes in org.biojava.bio.gui.sequence that implement PairwiseSequenceRendererModifier and TypeClassDescriptionclassCrosshairRendererdraws a crosshair, optionally with coordinates.classPairwiseDiagonalRendererrenders a region of similarity between two sequences as a straight line.classPairwiseFilteringRendererwraps aPairwiseSequenceRendererand filters thePairwiseRenderContexts passed to it.classPairwiseOverlayRendererallows a list of otherPairwiseSequenceRenderers to superimpose their output.Methods in org.biojava.bio.gui.sequence that return PairwiseSequenceRendererModifier and TypeMethodDescriptionPairwiseFilteringRenderer.getRenderer()getRendererreturn the current renderer.PairwiseSequencePanel.getRenderer()getRendererreturns the currentPairwiseSequenceRenderer.Methods in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRendererModifier and TypeMethodDescriptionprotected voidPairwiseOverlayRenderer._addRenderer(PairwiseSequenceRenderer renderer) protected voidPairwiseOverlayRenderer._removeRenderer(PairwiseSequenceRenderer renderer) voidPairwiseOverlayRenderer.addRenderer(PairwiseSequenceRenderer renderer) addRendereradds a renderer.voidPairwiseOverlayRenderer.removeRenderer(PairwiseSequenceRenderer renderer) removeRendererremoves a renderer.voidPairwiseFilteringRenderer.setRenderer(PairwiseSequenceRenderer renderer) setRenderersets the renderer.voidPairwiseSequencePanel.setRenderer(PairwiseSequenceRenderer renderer) setRenderersets the currentPairwiseSequenceRenderer.Constructors in org.biojava.bio.gui.sequence with parameters of type PairwiseSequenceRendererModifierConstructorDescriptionCreates a newPairwiseFilteringRendererwhich uses a filter which accepts all features.PairwiseFilteringRenderer(PairwiseSequenceRenderer renderer, FeatureFilter filter, boolean recurse) Creates a newPairwiseFilteringRenderer.Creates a newPairwiseRendererForwarder.