Uses of Interface
org.biojava.bio.gui.sequence.SequenceRenderer
Packages that use SequenceRenderer
Package
Description
Graphical displays of biological sequences and associated annotations.
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Uses of SequenceRenderer in org.biojava.bio.gui.sequence
Classes in org.biojava.bio.gui.sequence that implement SequenceRendererModifier and TypeClassDescriptionclassRenders an ABI trace file as a chromatogram graph.classA SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display.classclassclassFeatureBlockSequenceRendererforms a bridge betweenSequencerendering andFeaturerendering.classclassA renderer that will display a gapped sequence as a discontinuous series of regions.classA FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilterclassRenderer which draws a track of sequence with a textual label.classMultiLineRendereris aSequenceRendererwhich collects a number of otherSequenceRenderers each of which render their own view of aSequence.classOffsetRulerRenderer can render the ruler starting from an arbitrary offset from the sequence.classThis class wraps SequenceRenderer classes to present an Overlay Marker interface that will indicate to LayeredRenderer that subsequent renderers should overdraw the same space as the wrapped renderer.classA renderer that adds padding before and after a delegate renderer.classA concrete AbstractPeptideDigestRenderer.classRulerRendererrenders numerical scales in sequence coordinates.classA GlyphRenderer subclass that specificatlly handles Features pertaining to Secondary Structure (Helices, Turns and Strands).classAn implementation of SequenceRenderer that delegates rendering to another renderer.classClass that handles drawing in six frames for other classes.classCompute sites of stop codons.classSymbolSequenceRendererrenders symbols of aSymbolList.Methods in org.biojava.bio.gui.sequence that return SequenceRendererModifier and TypeMethodDescriptionOverlayRendererWrapper.getRenderer()SequencePanelWrapper.getRenderer()SequenceRendererWrapper.getRenderer()TranslatedSequencePanel.getRenderer()getRendererreturns the currentSequenceRenderer.Methods in org.biojava.bio.gui.sequence with parameters of type SequenceRendererModifier and TypeMethodDescriptionprotected voidMultiLineRenderer._addRenderer(SequenceRenderer renderer) protected voidMultiLineRenderer._removeRenderer(SequenceRenderer renderer) protected voidSequencePanel._setRenderer(SequenceRenderer r) protected voidSequencePoster._setRenderer(SequenceRenderer r) Deprecated.voidMultiLineRenderer.addRenderer(SequenceRenderer renderer) addRendereradds a renderer as a new track.doubleLineInfo.getDepth(SequenceRenderer r) voidMultiLineRenderer.removeRenderer(SequenceRenderer renderer) removeRendererremoves a renderer.voidLineInfo.setDepth(SequenceRenderer r, double depth) voidLabelledSequenceRenderer.setRenderer(SequenceRenderer sR) Set the child renderer responsible for drawing the contents of this trackvoidOverlayRendererWrapper.setRenderer(SequenceRenderer renderer) voidSequencePanel.setRenderer(SequenceRenderer r) voidSequencePanelWrapper.setRenderer(SequenceRenderer renderer) voidSequencePoster.setRenderer(SequenceRenderer r) Deprecated.voidSequenceRendererWrapper.setRenderer(SequenceRenderer renderer) voidTranslatedSequencePanel.setRenderer(SequenceRenderer renderer) setRenderersets the currentSequenceRenderer.Constructors in org.biojava.bio.gui.sequence with parameters of type SequenceRendererModifierConstructorDescriptionBumpedRenderer(SequenceRenderer renderer) BumpedRenderer(SequenceRenderer renderer, int leading, int trailing) FilteringRenderer(SequenceRenderer renderer, FeatureFilter filter, boolean recurse) GappedRenderer(SequenceRenderer renderer) LabelledSequenceRenderer(String label, SequenceRenderer renderer) OverlayRendererWrapper(SequenceRenderer renderer) PaddingRenderer(SequenceRenderer renderer, double padding) Build a new PaddingRenderer that wrapsrendererand has padding depthpadding.RendererForwarder(SequenceRenderer source, ChangeSupport cs) SequenceRendererWrapper(SequenceRenderer renderer) Create a new wrapper with a wrapped renderer