Uses of Class
org.biojava.bio.molbio.RestrictionEnzyme
Packages that use RestrictionEnzyme
Package
Description
The classes and interfaces in this package cover common molecular
biological techniques such as restriction digests and PCR.
Standard in-memory implementations of
Sequence and
Feature.-
Uses of RestrictionEnzyme in org.biojava.bio.molbio
Fields in org.biojava.bio.molbio declared as RestrictionEnzymeMethods in org.biojava.bio.molbio that return RestrictionEnzymeModifier and TypeMethodDescriptionstatic RestrictionEnzymegetEnzymereturns an enzyme by name.RestrictionSite.getEnzyme()getEnzymereturns the enzyme which cuts at this site.RestrictionEnzyme.getPrototype()The prototype is aRestrictionEnzymethat represents a set of isoshizomers.Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzymeModifier and TypeMethodDescriptionvoidRestrictionMapper.addEnzyme(RestrictionEnzyme enzyme) addEnzymeadds an enzyme to be searched for in theSequence.static AnnotationRestrictionEnzymeManager.getAnnotation(RestrictionEnzyme enzyme) getAnnotationreturns an immutable, static annotation describing the enzyme.static Pattern[]RestrictionEnzymeManager.getPatterns(RestrictionEnzyme enzyme) getPatternsreturns twoPatternobjects for an enzyme, one matches the forward strand and one the reverse.static StringRestrictionEnzymeManager.getSuppliers(RestrictionEnzyme enzyme) getSuppliersreturns a string describing the suppliers of this enzyme according to REBASE encoding for commercial sources or an empty String if the enzyme is not commecially available.static voidRestrictionEnzymeManager.register(RestrictionEnzyme enzyme, Set isoschizomers) registerregisiters a newRestrictionEnzymewith the manager.voidRestrictionMapper.removeEnzyme(RestrictionEnzyme enzyme) removeEnzymeremoves an enzyme from those to be searched for in theSequence.voidRestrictionEnzyme.setProtype(RestrictionEnzyme proto) Set the prototype of thisRestrictionEnzyme. -
Uses of RestrictionEnzyme in org.biojava.bio.seq.impl
Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme