java.lang.Object

org.biojava.bio.program.abi.ABIFParser.TaggedDataRecord

Enclosing class:: ABIFParser

public static class ABIFParser.TaggedDataRecord extends Object

An aggregate immutable type for an ABIF tagged data record. See the Tibbets paper (referenced in the javadoc for ABIFParser) for more information.

Field Summary

Fields

Modifier and Type

Field

Description

final long

crypticVariable

static final int

DATA_TYPE_ASCII_ARRAY

static final int

DATA_TYPE_DATE

static final int

DATA_TYPE_FLOAT

static final int

DATA_TYPE_INTEGER

static final int

DATA_TYPE_PSTRING

static final int

DATA_TYPE_TIME

final long

dataRecord

final int

dataType

final int

elementLength

final boolean

hasOffsetData

final long

numberOfElements

final byte[]

offsetData

final long

recordLength

final char[]

tagName

final long

tagNumber
Constructor Summary

Constructors

Constructor

Description

TaggedDataRecord(ABIFParser.DataAccess din)

Creates a new TaggedDataRecord from the next 28 bytes of din.
Method Summary

Modifier and Type

Method

Description

String

toString()

A very verbose toString that dumps all of the data in this record in a human-readable format.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details
- DATA_TYPE_ASCII_ARRAY
  
  public static final int DATA_TYPE_ASCII_ARRAY
  See Also:
  
  Constant Field Values
- DATA_TYPE_INTEGER
  
  public static final int DATA_TYPE_INTEGER
  See Also:
  
  Constant Field Values
- DATA_TYPE_FLOAT
  
  public static final int DATA_TYPE_FLOAT
  See Also:
  
  Constant Field Values
- DATA_TYPE_DATE
  
  public static final int DATA_TYPE_DATE
  See Also:
  
  Constant Field Values
- DATA_TYPE_TIME
  
  public static final int DATA_TYPE_TIME
  See Also:
  
  Constant Field Values
- DATA_TYPE_PSTRING
  
  public static final int DATA_TYPE_PSTRING
  See Also:
  
  Constant Field Values
- tagName
  
  public final char[] tagName
- tagNumber
  
  public final long tagNumber
- dataType
  
  public final int dataType
- elementLength
  
  public final int elementLength
- numberOfElements
  
  public final long numberOfElements
- recordLength
  
  public final long recordLength
- dataRecord
  
  public final long dataRecord
- crypticVariable
  
  public final long crypticVariable
- hasOffsetData
  
  public final boolean hasOffsetData
- offsetData
  
  public final byte[] offsetData
Constructor Details
- TaggedDataRecord
  
  public TaggedDataRecord(ABIFParser.DataAccess din) throws IOException
  
  Creates a new TaggedDataRecord from the next 28 bytes of din.
  
  Parameters:
  
  din - the source of the raw data to be parsed
  
  Throws:
  
  IOException - if there's a problem with din
Method Details
- toString
  
  public String toString()
  
  A very verbose toString that dumps all of the data in this record in a human-readable format.
  
  Overrides:
  
  toString in class Object

Class ABIFParser.TaggedDataRecord

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Details

DATA_TYPE_ASCII_ARRAY

DATA_TYPE_INTEGER

DATA_TYPE_FLOAT

DATA_TYPE_DATE

DATA_TYPE_TIME

DATA_TYPE_PSTRING

tagName

tagNumber

dataType

elementLength

numberOfElements

recordLength

dataRecord

crypticVariable

hasOffsetData

offsetData

Constructor Details

TaggedDataRecord

Method Details

toString