Package org.biojava.bio.program.gff
Class GFFErrorHandler.SkipRecordErrorHandler
java.lang.Object
org.biojava.bio.program.gff.GFFErrorHandler.SkipRecordErrorHandler
- All Implemented Interfaces:
GFFErrorHandler
- Enclosing interface:
- GFFErrorHandler
public static class GFFErrorHandler.SkipRecordErrorHandler
extends Object
implements GFFErrorHandler
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.bio.program.gff.GFFErrorHandler
GFFErrorHandler.AbortErrorHandler, GFFErrorHandler.SkipRecordErrorHandler -
Field Summary
Fields inherited from interface org.biojava.bio.program.gff.GFFErrorHandler
ABORT_PARSING, SKIP_RECORD -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionintinvalidEnd(String token) The `end' field of the GFF entry was not a valid value.intinvalidFrame(String token) The `frame' field of the GFF entry was not a valid value.doubleinvalidScore(String token) The `score' field of the GFF entry was not a valid value.intinvalidStart(String token) The `start' field of the GFF entry was not a valid value.invalidStrand(String token) The `strand' field of the GFF entry was not a valid value.
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Constructor Details
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SkipRecordErrorHandler
public SkipRecordErrorHandler()
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Method Details
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invalidStart
Description copied from interface:GFFErrorHandlerThe `start' field of the GFF entry was not a valid value.- Specified by:
invalidStartin interfaceGFFErrorHandler- Parameters:
token- The start token found.- Returns:
- A parsed value, if this is possible
- Throws:
IgnoreRecordException- If this record should be silently skipped.
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invalidEnd
Description copied from interface:GFFErrorHandlerThe `end' field of the GFF entry was not a valid value.- Specified by:
invalidEndin interfaceGFFErrorHandler- Parameters:
token- The end token found.- Returns:
- A parsed value, if this is possible
- Throws:
IgnoreRecordException- If this record should be silently skipped.
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invalidScore
Description copied from interface:GFFErrorHandlerThe `score' field of the GFF entry was not a valid value.- Specified by:
invalidScorein interfaceGFFErrorHandler- Parameters:
token- The score token found.- Returns:
- A parsed value, if this is possible
- Throws:
IgnoreRecordException- If this record should be silently skipped.
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invalidFrame
Description copied from interface:GFFErrorHandlerThe `frame' field of the GFF entry was not a valid value.- Specified by:
invalidFramein interfaceGFFErrorHandler- Parameters:
token- The frame token found.- Returns:
- A parsed value, if this is possible
- Throws:
IgnoreRecordException- If this record should be silently skipped.
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invalidStrand
Description copied from interface:GFFErrorHandlerThe `strand' field of the GFF entry was not a valid value.- Specified by:
invalidStrandin interfaceGFFErrorHandler- Parameters:
token- The strand token found.- Returns:
- A parsed value, if this is possible
- Throws:
IgnoreRecordException- If this record should be silently skipped.
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