Interface HomologeneBuilder

Method Details

• startDB

  void startDB()

  indicates start of data for a HomologeneDB

• startGroup

  void startGroup()

  indicates start of data for a OrthoPairSet

• startOrthoPair

  void startOrthoPair()

  indicates start of data for an OrthoPair

• startOrthologue

  void startOrthologue()

  indicates start of data for an orthologue

• addOrthologueProperty

  void addOrthologueProperty(String key, String value)

  add a property to the current Orthologue

• endOrthologue

  void endOrthologue()

  end of data for this Orthologue

• addOrthoPairProperty

  void addOrthoPairProperty(String key, String value)

  add a property to the current OrthoPair

• endOrthoPair

  void endOrthoPair()

  end of data for this OrthoPair

• addTitle

  void addTitle(int taxonID, String homologeneID, String title)

  add title information to an Orthologue (this is not in enclosed in the Orthologue element because it comes completely separate in the Homologene data files. Go figger.)

• endGroup

  void endGroup()

  end of data for group

• endDB

  void endDB()

  end of data for DB

• getDB

  HomologeneDB getDB()

  retrieve the DB that has just been built