Package org.biojava.bio.program.homologene

Interface Orthologue

All Known Implementing Classes:
SimpleOrthologue
public interface Orthologue
this entry contains data about the orthologue.

  • Method Summary

    Modifier and Type
    Method
    Description
    String
    getAccession()
    get the Accession ID associated with this orthologue.
    String
    getHomologeneID()
    get the Homologene ID.
    String
    getLocusID()
    get the locus ID associated with this orthologue.
    Taxon
    getTaxon()
    return the Taxon associated with this orthologue
    int
    getTaxonID()
    a convenience method to return the TaxonID for thsi orhtologue.
    String
    getTitle()
    return the title used by Genbank for this protein
    void
    setTitle(String title)
     

  • Method Details

    • getTitle

      String getTitle()
      return the title used by Genbank for this protein

    • getTaxon

      Taxon getTaxon()
      return the Taxon associated with this orthologue

    • getTaxonID

      int getTaxonID()
      a convenience method to return the TaxonID for thsi orhtologue.

    • getLocusID

      String getLocusID()
      get the locus ID associated with this orthologue. It can be null.

    • getHomologeneID

      String getHomologeneID()
      get the Homologene ID. This is unique and always defined.

    • getAccession

      String getAccession()
      get the Accession ID associated with this orthologue.

    • setTitle

      void setTitle(String title)