Uses of Interface
org.biojava.bio.program.homologene.OrthoPair
Packages that use OrthoPair
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Uses of OrthoPair in org.biojava.bio.program.homologene
Classes in org.biojava.bio.program.homologene that implement OrthoPairModifier and TypeClassDescriptionclassA no-frills implementation of the OrthoPair interfaceMethods in org.biojava.bio.program.homologene that return OrthoPairModifier and TypeMethodDescriptionHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, String ref) Create a curated orthology entry.HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) Create a computed orthology entry.SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, String ref) SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity) OrthoPairSet.Iterator.nextOrthoPair()SimpleOrthoPairSet.Iterator.nextOrthoPair()Methods in org.biojava.bio.program.homologene with parameters of type OrthoPairModifier and TypeMethodDescriptionbooleanbooleanbooleanbooleanbooleanbooleanbooleanbooleanbooleanbooleanvoidOrthoPairSet.addOrthoPair(OrthoPair orthology) adds a specified OrthoPair relationship to this group.voidSimpleOrthoPairSet.addOrthoPair(OrthoPair orthology) voidOrthoPairSet.removeOrthoPair(OrthoPair orthology) removes a specified OrthoPair relationship from this group.voidSimpleOrthoPairSet.removeOrthoPair(OrthoPair orthology)