Uses of Interface
org.biojava.bio.program.homologene.OrthoPairSet
Packages that use OrthoPairSet
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Uses of OrthoPairSet in org.biojava.bio.program.homologene
Classes in org.biojava.bio.program.homologene that implement OrthoPairSetModifier and TypeClassDescriptionclassrepresents the Homologene Group.classa no-frills implementation of a Homologene GroupMethods in org.biojava.bio.program.homologene that return OrthoPairSetModifier and TypeMethodDescriptionHomologeneDB.createOrthoPairSet()Create a Homologene Group.SimpleHomologeneDB.createOrthoPairSet()AbstractOrthoPairSet.filter(OrthoPairFilter filter) OrthoPairSet.filter(OrthoPairFilter filter) filter an OrthoPairSetOrthoPairCollection.Iterator.nextSet()returns the next OrthoPairSetSimpleOrthoPairCollection.Iterator.nextSet()Methods in org.biojava.bio.program.homologene with parameters of type OrthoPairSetModifier and TypeMethodDescriptionbooleanOrthoPairSetFilter.accept(OrthoPairSet group) booleanOrthoPairSetFilter.AcceptAll.accept(OrthoPairSet group) booleanOrthoPairSetFilter.AllPairsInCollection.accept(OrthoPairSet group) booleanOrthoPairSetFilter.And.accept(OrthoPairSet group) booleanOrthoPairSetFilter.ByMinIdentity.accept(OrthoPairSet group) booleanOrthoPairSetFilter.ByTaxon.accept(OrthoPairSet group) booleanOrthoPairSetFilter.Not.accept(OrthoPairSet group) booleanOrthoPairSetFilter.Or.accept(OrthoPairSet group) booleanOrthoPairSetFilter.SomePairsInCollection.accept(OrthoPairSet group) booleanOrthoPairSetFilter.Xor.accept(OrthoPairSet group) abstract voidAbstractOrthoPairCollection.add(OrthoPairSet group) voidOrthoPairCollection.add(OrthoPairSet group) voidSimpleOrthoPairCollection.add(OrthoPairSet group) abstract booleanAbstractOrthoPairCollection.contains(OrthoPairSet group) booleanOrthoPairCollection.contains(OrthoPairSet group) booleanSimpleOrthoPairCollection.contains(OrthoPairSet group)