Class BlastXMLParserFacade

Method Details

• getContentHandler

  public ContentHandler getContentHandler()

  correct this later

  Specified by:

  getContentHandler in interface XMLReader

• getDTDHandler

  public DTDHandler getDTDHandler()

  Specified by:

  getDTDHandler in interface XMLReader

• getEntityResolver

  public EntityResolver getEntityResolver()

  This class has an EntityResolver that resolves the public ID specifying the NCBI DTDs to resource files within the BioJava libraries. This call will return that resolver. It you should set your own resolver, ensure you resolve that URN yourself or the parser will blow up on you!.

  Specified by:

  getEntityResolver in interface XMLReader

• getErrorHandler

  public ErrorHandler getErrorHandler()

  Specified by:

  getErrorHandler in interface XMLReader

• getFeature

  public boolean getFeature(String name) throws SAXNotRecognizedException, SAXNotSupportedException

  Specified by:

  getFeature in interface XMLReader

  Throws:

  SAXNotRecognizedException

  SAXNotSupportedException

• getProperty

  public Object getProperty(String name) throws SAXNotRecognizedException, SAXNotSupportedException

  Specified by:

  getProperty in interface XMLReader

  Throws:

  SAXNotRecognizedException

  SAXNotSupportedException

• parse

  public void parse(InputSource is) throws IOException, SAXException

  Specified by:

  parse in interface XMLReader

  Throws:

  IOException

  SAXException

• parse

  public void parse(String systemId) throws IOException, SAXException

  Specified by:

  parse in interface XMLReader

  Throws:

  IOException

  SAXException

• setContentHandler

  public void setContentHandler(ContentHandler handler)

  this sets the ContentHandler that receives SAX events from the internal Blast XML parser which is the actual ContentHandler. It will not change the internal Blast XML parser.

  Specified by:

  setContentHandler in interface XMLReader

• setDTDHandler

  public void setDTDHandler(DTDHandler handler)

  Specified by:

  setDTDHandler in interface XMLReader

• setEntityResolver

  public void setEntityResolver(EntityResolver resolver)

  This class has an EntityResolver that resolves the public ID specifying the NCBI DTDs to resource files within the BioJava libraries. This call will return that resolver. It you should set your own resolver, ensure you resolve that URN yourself or the parser will blow up on you!.

  Specified by:

  setEntityResolver in interface XMLReader

• setErrorHandler

  public void setErrorHandler(ErrorHandler handler)

  Specified by:

  setErrorHandler in interface XMLReader

• setFeature

  public void setFeature(String key, boolean value) throws SAXNotRecognizedException, SAXNotSupportedException

  by default, we set the parser to non-validating. change it if you wish/dare! The parser is also set to be namespace aware. DO NOT CHANGE THAT!!!

  Specified by:

  setFeature in interface XMLReader

  Throws:

  SAXNotRecognizedException

  SAXNotSupportedException

• setProperty

  public void setProperty(String key, Object value) throws SAXNotRecognizedException, SAXNotSupportedException

  Specified by:

  setProperty in interface XMLReader

  Throws:

  SAXNotRecognizedException

  SAXNotSupportedException