Uses of Interface
org.biojava.bio.program.ssaha.SearchListener
Packages that use SearchListener
-
Uses of SearchListener in org.biojava.bio.program.ssaha
Classes in org.biojava.bio.program.ssaha that implement SearchListenerModifier and TypeClassDescriptionclassA listener that merges overlapping hits and culls all hits under a given length.static final classA SearchListener that prints events out to a PrintStream.static final classA simple listener that filters out all hits that are too short.static final classA SearchListener that passes events on to two delegate listeners.static classA simple wrapper implementation.Methods in org.biojava.bio.program.ssaha with parameters of type SearchListenerModifier and TypeMethodDescriptionvoidCompactedDataStore.fireHits(int word, int offset, SearchListener listener) voidCompactedDataStore.search(String seqID, SymbolList symList, SearchListener listener) voidDataStore.search(String id, SymbolList symList, SearchListener listener) Search the DataStore with a symbol list.Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListenerModifierConstructorDescriptionFilterByLength(SearchListener delegate, int minLength) HitMerger(SearchListener delegate, int minLength) Build a new HitMerger that will pass events on to a delegate.Tee(SearchListener d1, SearchListener d2) Wrapper(SearchListener delegate)